BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2252.p
         (139 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980542|ref|YP_001352053.1| biopolymer transport protein Ex...   122   1e-29
gi|152981671|ref|YP_001354584.1| biopolymer transport protein Ex...   110   4e-26
gi|152981777|ref|YP_001351936.1| biopolymer transport protein Ex...    98   2e-22
gi|152981856|ref|YP_001351937.1| biopolymer transport protein Ex...    82   1e-17

>gi|152980542|ref|YP_001352053.1| biopolymer transport protein ExbD
           [Janthinobacterium sp. Marseille]
          Length = 136

 Score =  122 bits (305), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 86/133 (64%)

Query: 1   MSMMNDAGGDGLATEINMTPLIDVMLVLLIIFIVTLPAINQAVKVTLPKATAQPTETASK 60
           M+M + +  D    EIN TPL+DVMLVLLIIFI+T+P +N AVK+ LP A  QP +   +
Sbjct: 1   MAMGSLSDEDDFNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPHAANQPNDVKPE 60

Query: 61  DIDISIQADGTVLWNRVPANLDELRTRVAAAAAAAVPPAVNVYADEKVPYGSVARVLAGV 120
            I++SI A G V WN    +  ++ +R+A AA     P +++ AD   PY  VA+V+A  
Sbjct: 61  TINVSIDAAGQVYWNNEVLDQSQMLSRIADAAKVTPQPELHLRADRLTPYEKVAQVMAAA 120

Query: 121 QSGGLTKINFVTE 133
           QSGGLTK+ FVTE
Sbjct: 121 QSGGLTKMGFVTE 133


>gi|152981671|ref|YP_001354584.1| biopolymer transport protein ExbD
           [Janthinobacterium sp. Marseille]
          Length = 142

 Score =  110 bits (274), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 79/136 (58%)

Query: 4   MNDAGGDGLATEINMTPLIDVMLVLLIIFIVTLPAINQAVKVTLPKATAQPTETASKDID 63
            ND    G   +IN+TP++DVMLVLL+IFI+T P    A+K+ LP A + P  T    I 
Sbjct: 6   FNDKQQAGPMADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPTEPTTIS 65

Query: 64  ISIQADGTVLWNRVPANLDELRTRVAAAAAAAVPPAVNVYADEKVPYGSVARVLAGVQSG 123
           +SI   G V WN     LD+L TR+A AA     P V + AD+   Y  +A+V+A  Q  
Sbjct: 66  LSINGAGAVFWNNDAVTLDDLNTRLATAAKQQPQPQVQLRADKGTRYEVIAQVMASAQGN 125

Query: 124 GLTKINFVTEPVKDTQ 139
           G+TK+ FVTE  + T+
Sbjct: 126 GITKLGFVTETPQSTK 141


>gi|152981777|ref|YP_001351936.1| biopolymer transport protein ExbD
           [Janthinobacterium sp. Marseille]
          Length = 142

 Score = 98.2 bits (243), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 3/137 (2%)

Query: 1   MSMMNDAGG--DGLATEINMTPLIDVMLVLLIIFIVTLPAINQAVKVTLPKATAQPTETA 58
           M+++   GG  D + +EIN TPL+DVMLVLLIIF++T+P +   + V LP       ET 
Sbjct: 1   MALIFGNGGEEDSVVSEINTTPLVDVMLVLLIIFLITIPVVTNTIAVNLPHEENHVRETK 60

Query: 59  SKDIDISIQADGTVLWNRVP-ANLDELRTRVAAAAAAAVPPAVNVYADEKVPYGSVARVL 117
            ++I++S+  +G + W++   A  + L TR+   A     P + +  D    Y ++ RV+
Sbjct: 61  PENINLSVDKNGKIYWDQESIAGAEALTTRLKTVAVQQPQPEIQIRGDGDAKYEAIGRVI 120

Query: 118 AGVQSGGLTKINFVTEP 134
              Q  G+ KI F+TEP
Sbjct: 121 FACQRAGIVKIGFITEP 137


>gi|152981856|ref|YP_001351937.1| biopolymer transport protein ExbD
           [Janthinobacterium sp. Marseille]
          Length = 143

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 5   NDAGGDGLATEINMTPLIDVMLVLLIIFIVTLPAINQAVKVTLPKATAQPTETASKDIDI 64
           N +G   + +E+N TPLIDVMLVLLI+ I+T+P     V++ LP     P     + + +
Sbjct: 9   NGSGEPEVMSEMNTTPLIDVMLVLLIMLIITIPIQLHNVELNLPAGNPPPQTVIPEVVQV 68

Query: 65  SIQADGTVLWNRVPANLDE-LRTRVAAAAAAAVPPAVNVYADEKVPYGSVARVLAGVQSG 123
            I A G V WN    N  E L ++++ AAA  V P +++ AD   PY +VA VLA  Q  
Sbjct: 69  DINAAGVVSWNGEAINDREVLDSKLSGAAAQDVQPELHLRADRNAPYKAVAAVLASAQRL 128

Query: 124 GLTKINFV 131
           G  K+  V
Sbjct: 129 GANKLGLV 136


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 283,697
Number of extensions: 8624
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 6
Length of query: 139
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 65
Effective length of database: 947,443
Effective search space: 61583795
Effective search space used: 61583795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)