BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2251.p (243 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981614|ref|YP_001352054.1| biopolymer transport protein Ex... 214 3e-57 gi|152981708|ref|YP_001351935.1| biopolymer transport protein Ex... 176 1e-45 gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel f... 172 3e-44 gi|152980246|ref|YP_001354154.1| biopolymer transport protein [J... 90 1e-19 gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthin... 55 5e-09 >gi|152981614|ref|YP_001352054.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 242 Score = 214 bits (546), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 148/222 (66%), Gaps = 4/222 (1%) Query: 4 YGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIE 63 YGL ++W QGD VT+ + +L+ MS SW V+ K + + R A EFW A S+ Sbjct: 6 YGLESLWSQGDFVTKGVAVLLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWDATSLT 65 Query: 64 GGIAAIGAGTDNPYSNIATAAVEA--HAQKDQPLLEGSTSNTEWVAYCVRNALDEQIAHL 121 G A +G G NP+++IA A V A H + + L S ++W+ +R A+DE A L Sbjct: 66 EGTATLGNG--NPFADIAEAGVTAMRHHEAHKGHLHDQLSVSDWITLSLRQAIDETSAKL 123 Query: 122 QGGLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLF 181 Q G+AVLAS+GST+PF+GLFGTVWGIYHAL+ IG SGQAS+D VAGPVGE+L+MTA+GL Sbjct: 124 QSGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTALGLA 183 Query: 182 VAIPAVLGYNYVSRGNRTVAQKLMRFSHQLHVYYVTGNKMKE 223 VAIPA GYN + RGN++V K+ +F LH +VTG++ + Sbjct: 184 VAIPATFGYNALVRGNKSVIAKMNKFGFDLHALFVTGSRAND 225 >gi|152981708|ref|YP_001351935.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 279 Score = 176 bits (446), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 136/219 (62%), Gaps = 4/219 (1%) Query: 4 YGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIE 63 YG++ +W D V + + ILL S SW +++ K +A R+L + + FW A ++ Sbjct: 63 YGISALWNGSDFVAKGTLLILLLFSIGSWYIIVAKLLAQRKLHKQARDTERTFWDAGTVR 122 Query: 64 GGIAAIGAGTDNPYSNIATAAVEAHAQKDQPLLEGSTSNTEWVAYCVRNALDEQIAHLQG 123 G+ + +GT P+ I T A++A + LL NT WV + +++D LQ Sbjct: 123 QGLDTLESGT--PFHFIGTLALKA-TEHHSGLLAHVDFNT-WVVQSLHSSVDTVKNRLQD 178 Query: 124 GLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVA 183 GLA LA++GST+PF+GLFGTVWGIYHAL IG SGQAS+D VAGPVGE+L+MTA+GL VA Sbjct: 179 GLAFLATVGSTAPFVGLFGTVWGIYHALTAIGLSGQASIDKVAGPVGEALIMTAIGLAVA 238 Query: 184 IPAVLGYNYVSRGNRTVAQKLMRFSHQLHVYYVTGNKMK 222 +PAVLGYN + R N+ +K+ FS LH ++ K Sbjct: 239 VPAVLGYNLLVRRNKAALEKVQDFSSTLHAVLLSSAPSK 277 >gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel family protein [Janthinobacterium sp. Marseille] Length = 230 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 3/222 (1%) Query: 2 ENYGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHS 61 + GLA+ W QGD V+ + +LL MS +SW ++ K ++ R+ R A FW A + Sbjct: 8 QGLGLAHYWAQGDAVSHSVAYVLLIMSILSWYYILSKAWSSWRI-RKSAAALDGFWQAPT 66 Query: 62 IEGGIAAIG-AGTDNPYSNIATAAVEAHAQKDQP-LLEGSTSNTEWVAYCVRNALDEQIA 119 + IA I + ++N Y+ +A +VEA K L +T E + +R ++ + Sbjct: 67 LTDAIATIRRSDSENVYTPLAAQSVEAANIKPHANSLNANTDPGELITRTLRQEINRVSS 126 Query: 120 HLQGGLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVG 179 L+ GL +LAS+GST+PFIGLFGTVWGIYHAL+ + +SG +D VAGPVGE+L+MTA+G Sbjct: 127 RLETGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSSSGTIQIDKVAGPVGEALIMTALG 186 Query: 180 LFVAIPAVLGYNYVSRGNRTVAQKLMRFSHQLHVYYVTGNKM 221 L VAIPAVL YN +R NR +L F+H LH Y TG ++ Sbjct: 187 LAVAIPAVLAYNAFTRVNRVTLAELDAFAHDLHAYLTTGARV 228 >gi|152980246|ref|YP_001354154.1| biopolymer transport protein [Janthinobacterium sp. Marseille] Length = 230 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 11/206 (5%) Query: 15 VVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIEGGIAAIGAGTD 74 V+ + ++ +LLG+S +SW + K A + + + FW+ + + A ++ Sbjct: 18 VLVQLVMALLLGVSVMSWTYIFRKMFAIKNARAQTEEFERAFWSGGDL--NTLYLEASSN 75 Query: 75 NPYSNIATAAVEAHAQKDQPLL---EGS------TSNTEWVAYCVRNALDEQIAHLQGGL 125 +N +T A+E + +GS ++ + +R A ++ L+ L Sbjct: 76 RRKNNGSTGALERIFEAGMSEFNKAKGSNDSFHVSARLDGARRAMRAAYQREMDALESHL 135 Query: 126 AVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVAIP 185 A LAS+GS SP++GLFGTVWGI +A + QA+L VA + E+L+ TA+GLF AIP Sbjct: 136 AFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAEALIATAIGLFAAIP 195 Query: 186 AVLGYNYVSRGNRTVAQKLMRFSHQL 211 AV+ YN S +A + F + Sbjct: 196 AVVAYNRYSHDIDRLAIRFESFVEEF 221 >gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthinobacterium sp. Marseille] Length = 591 Score = 54.7 bits (130), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 24/210 (11%) Query: 19 FLITILLG-MSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIEGGIAAIGAGTDNPY 77 +L+ ILLG M +SW +MI KG +SR F + + + + P Sbjct: 368 WLVVILLGVMMVLSWAIMISKGRNYGAISRANAIFMDHF--RETAGAPLDQLANSSKLPQ 425 Query: 78 SNIATAAV---------EAHAQKDQPLLEGSTSNTEWVAYCVRNALD-------EQIAHL 121 A +++ E + D+ + SN A +R A+D E+++H Sbjct: 426 DVKADSSLWRLYKVAVDEMRRRHDRGYDLNAVSNATISA--IRAAMDGVMVRENERMSHR 483 Query: 122 QGGLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLF 181 + L++ +P++GLFGTV GI + +G ++ VA + +L+ TA GL Sbjct: 484 ---MNWLSTAIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVAPGMAAALLCTAAGLG 540 Query: 182 VAIPAVLGYNYVSRGNRTVAQKLMRFSHQL 211 VAIPA+ GYN+++ + + + F + Sbjct: 541 VAIPALFGYNWLASRSDAIGADMAVFVDEF 570 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 541,101 Number of extensions: 20155 Number of successful extensions: 72 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 5 Length of query: 243 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 162 Effective length of database: 921,564 Effective search space: 149293368 Effective search space used: 149293368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)