BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2248.p
         (154 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...    92   2e-20
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    71   3e-14
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    70   5e-14

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 91.7 bits (226), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 2   IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQKLEAEGVIKRRVVLLDAEKLN 61
            DR DR +LE LQ     +  E++E VNLS   C+RR+Q+LE EGVI+     +DA  + 
Sbjct: 4   FDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAIG 63

Query: 62  VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVYRMSGHIDYMLKVMVPNIGAYDS-V 120
           + VT  V +   +     +++    +   PE++E Y +SG  DY+LKV+  ++ +  S +
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSFL 123

Query: 121 YKRLISAVELDDVSSSFSMETLKSTTALPL 150
             RL+    +  V S   +E +K  + LPL
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIKPASPLPL 153


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 70.9 bits (172), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 2   IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQKLEAEGVIKRRVVLLDAEKLN 61
           +D  DRRIL  LQ D+++   ++A  V+ S   C RR+++L   GVI+R+V ++  + + 
Sbjct: 8   LDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQMVG 67

Query: 62  VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVYRMSGHIDYMLKVMVPNIGAYDSVY 121
             +T +VEI   + +     +F  +V     V++ YR+S   D++L V V ++ AY  + 
Sbjct: 68  AGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHVLA 127

Query: 122 KRLISA-VELDDVSSSFSMETLKSTT 146
            RL +    + +V S FS+   K  T
Sbjct: 128 HRLFATHANVRNVRSFFSINRSKFET 153


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 70.1 bits (170), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 2   IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQKLEAEGVIKRRVVLLDAEKLN 61
           +D+ DR++L +LQ+D+      +A+ V++S   C RRI+ +   G+I   V ++D   L 
Sbjct: 7   LDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 62  VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVYRMSGHIDYMLKVMVPNIGAYDSVY 121
             +   +E+     S   +++F   +    EV++ Y +SG  DY L V V ++ AY    
Sbjct: 67  YGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 122 KRLISAV-ELDDVSSSFSMETLKSTTALPL 150
           +R IS    +    S F M+  K  T +  
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDTRIAF 156


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 297,133
Number of extensions: 9703
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 78
Effective length of database: 940,049
Effective search space: 73323822
Effective search space used: 73323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)