BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2246.p (315 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981338|ref|YP_001353713.1| Fe2+-dicitrate sensor, membrane... 118 5e-28 gi|152981311|ref|YP_001352850.1| Fe2+-dicitrate sensor, membrane... 113 1e-26 gi|152981320|ref|YP_001353719.1| Fe2+-dicitrate sensor, membrane... 110 1e-25 gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane... 90 2e-19 gi|152980828|ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane... 81 1e-16 >gi|152981338|ref|YP_001353713.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 299 Score = 118 bits (295), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 148/291 (50%), Gaps = 16/291 (5%) Query: 33 FAEWHAASAANRAAWQS----LQQKLTSFRSFGQSAQAQAQGAGRQALLNAGQSRRRMLR 88 F +W AA ++ AW L + L+ R G A Q Q A R ALLN RR++LR Sbjct: 9 FEQWRAADPSHELAWNRVAGLLNESLSVVRDAGLRAPGQVQAAQR-ALLNT--RRRKLLR 65 Query: 89 NS--FTGVVGLAVVGALGYRGLQACGYDATLRTGTGELREAALNPDIGVTLDAGTIVDAT 146 + F GV +V+ L R + A L+TGTG+ + AL V L+A + VD Sbjct: 66 GALVFAGVGTTSVL--LAERQIAVGQLWADLQTGTGQRQTFALADGSSVQLNARSAVDID 123 Query: 147 ATG----WRMESGQMLVNAMHNR-KPFDILSARGNLHASAARFSFSSYETHSLVAVVQGS 201 R+ +G+++ + + +PF + + G + A RF S + S V V++ S Sbjct: 124 FNQDRRQLRLRAGELIASVAPDAGRPFLVQTTHGIIRALGTRFLVSQQDRQSQVVVLEHS 183 Query: 202 ATLTTPDGMVKMITQGDVVSLSEAGIERSSQSLANAVAWTEGLFVASDQAVADVIGVLRR 261 L T DG + +G+ + + IER + + + AW++G+ + +A+V+ L+ Sbjct: 184 VELRTRDGQHMRLREGEGATFDHSQIERIAGNASAHAAWSDGMLAVENATLAEVVAALKP 243 Query: 262 HRQGVIRVTRKAAAKRVSGIFNMRMPDAVLRQLAETVALKVESYGRFLVTV 312 + G IR++ +AA+ R G+F + P VLR LA T+ LK+ YG +L+++ Sbjct: 244 YYSGYIRLSPEAASLRTFGVFPLEDPGHVLRTLAHTLPLKMHHYGNWLISI 294 >gi|152981311|ref|YP_001352850.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 330 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 147/315 (46%), Gaps = 17/315 (5%) Query: 10 IKAAITWEVLMRSGEASIEDQTRFAEWHAASAANRAAWQSLQQKLTSFRSFGQSAQAQAQ 69 +K AI W V ++SG AS D+ W AA + + AWQ L FR+ S+ A Sbjct: 17 VKQAIVWLVTLQSGGASPTDERACEAWRAADSRHEQAWQRLHGLGQDFRA---SSNVLAS 73 Query: 70 GAGRQALLNAGQSRRRMLRNSFTGVVGLAVVGALGYRGLQACGYDATL---RTGTGELRE 126 R L N+ ++ RR++ S GLA++G + + + + +T TGE R Sbjct: 74 PLLRSVLRNSERNNRRIVLKSL---FGLALIGGTATVVRKQPAWQSAMAEHQTATGEQRR 130 Query: 127 AALNPDIGVTLDAGTIVDATATGWR----MESGQMLVNAMHNR--KPFDILSARGNLHAS 180 L + L+ T +D + G++L+ + +PF++ ++ G + Sbjct: 131 IVLADGTRILLNTATAIDVHFDDQLRLVILHRGEILIETAQDEAGRPFELATSNGTIRPI 190 Query: 181 AARFSF--SSYETHSLVAVVQGSATLTTPDGMVKMITQGDVVSLSEAGIERSSQSLANAV 238 RF+ S + + VAV++G+ +T G I G+ +E +A Sbjct: 191 GTRFTVRHSDRPSSTAVAVLEGAVRVTPGQGNSVRINAGEQTHFTELAALAPFALDDSAA 250 Query: 239 AWTEGLFVASDQAVADVIGVLRRHRQGVIRVTRKAAAKRVSGIFNMRMPDAVLRQLAETV 298 AWT+G+ V +AD + L R+R GV+R A VSG F +R PDAVL LAET+ Sbjct: 251 AWTDGVLVVERMRLADFVTELDRYRPGVLRCDPAVADLLVSGSFPLRDPDAVLALLAETL 310 Query: 299 ALKVESYGRFLVTVS 313 L+V + R+ TV+ Sbjct: 311 PLQVRTLTRYWATVT 325 >gi|152981320|ref|YP_001353719.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 329 Score = 110 bits (274), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 9/313 (2%) Query: 6 LKDPI-KAAITWEVLMRSGEASIEDQTRFAEWHAASAANRAAWQSLQQKLTSFRSFGQSA 64 + DPI +AAI W + +RSG+A F +W + A + L+Q L +F S A Sbjct: 13 VTDPIVEAAIDWIICLRSGDAGPVQYEAFKQWRLQDVRHDTAIRHLEQVLGTFDSL--PA 70 Query: 65 QAQAQGAGRQALLNAGQSRRRMLRNSFTGVVGLAVVGALGYRGLQACGYDATLRTGTGEL 124 + + + R+ALL + R+ + +VG + G L R A LRT TG+ Sbjct: 71 SSHVRSSARRALLKSPDRRKLLRNTLALLLVG-SGTGLLAQRITPLNTVTADLRTSTGQR 129 Query: 125 REAALNPDIGVTLDAGTI----VDATATGWRMESGQMLVN-AMHNRKPFDILSARGNLHA 179 + L + L+A + D + + SG+++V+ A ++PF + SA G++ A Sbjct: 130 KHMHLADGSQIWLNARSAADIDFDESTRRIHLRSGEIVVDVAADAQRPFIVESAEGSMRA 189 Query: 180 SAARFSFSSYETHSLVAVVQGSATLTTPDGMVKMITQGDVVSLSEAGIERSSQSLANAVA 239 RF E +++AV+ S + DG + + G+ ++ I + A A Sbjct: 190 LGTRFLVRQEEGATVLAVLHSSVRIDAKDGASRTLVAGETARFDQSQITVIDTASGAAAA 249 Query: 240 WTEGLFVASDQAVADVIGVLRRHRQGVIRVTRKAAAKRVSGIFNMRMPDAVLRQLAETVA 299 W +G D+ +++VI +R +R G +RVT +A A RV+G F + L LAET+ Sbjct: 250 WVDGFIEVHDRPLSEVIAAMRPYRSGFLRVTPQAGALRVTGTFPLDDSKRTLAALAETLP 309 Query: 300 LKVESYGRFLVTV 312 + + S + +++ Sbjct: 310 IVIRSRTDYWISI 322 >gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 334 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 141/309 (45%), Gaps = 13/309 (4%) Query: 10 IKAAITWEVLMRSGEASIEDQTRFAEWHAASAANRAAWQSLQQKLTSFRSFGQSAQAQAQ 69 I A+ W V + SG A ++ + + +W AA + AW ++ R G+ A Sbjct: 14 IDKAVEWLVHLWSGSADLDSRAAWQKWRAADPEHERAWLHIEDVNQQLR--GRMNGVSAD 71 Query: 70 GAGRQALLNAGQSRRRMLRNSFTGVVGLAVVGALGYRGLQACGYDATLRTGTGELREAAL 129 A A +SRR+ L+ +F+ VV + L + + +RT TGE L Sbjct: 72 TAIASIAQPASRSRRKALK-TFSVVVTVGTAAWLSSETMLWKTLTSEIRTATGERLNFKL 130 Query: 130 NPDIGVTLDAGTIV----DATATGWRMESGQMLV----NAMHNRKPFDILSARGNLHASA 181 + L+ T V D+ ++ G++L+ +++ +PF + G + A Sbjct: 131 ADGTQLELNTDTAVNVRYDSALRLVQLVRGELLITTAKDSVSPARPFMAETVAGRILALG 190 Query: 182 ARFSFSSYETHSLVAVVQGSATLTTPD--GMVKMITQGDVVSLSEAGIERSSQSLANAVA 239 +F+ S VAV++G+ L + G V + G S + G Q+++ A Sbjct: 191 TKFTVRQDGDISQVAVLEGAVELIPANNPGQVVRLDAGQAGSFNAEGALTPPQAISAQAA 250 Query: 240 WTEGLFVASDQAVADVIGVLRRHRQGVIRVTRKAAAKRVSGIFNMRMPDAVLRQLAETVA 299 WTEG+ +ASD + D I L+R+R G + +A R+SG+F + +L L E + Sbjct: 251 WTEGVLIASDMRLDDFIAELKRYRPGHLSCDPASAGLRLSGVFPLNDMQKILTSLTEVLP 310 Query: 300 LKVESYGRF 308 ++V+++ R+ Sbjct: 311 VRVQTFTRY 319 >gi|152980828|ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 327 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 24/311 (7%) Query: 13 AITWEVLMRSGEASIEDQTRFAEWHAASAANRAAWQSLQQKLTSFRSFGQSAQAQAQGAG 72 A W V + S E D W S ++ AW + + R+FG A G G Sbjct: 24 AANWLVKLHSQEMDASDHASLKRWCEQSTEHQRAWHAANELA---RNFG----AVPAGLG 76 Query: 73 RQALLNAGQSRRRMLRNSFTGVVGLAVVGALGYRGLQACGYDATLRTGTGELREAALNPD 132 L Q RR + V LA L + + Y +T TGE L Sbjct: 77 LTTL--GRQRNRRAAMKTLAIVCTLAPTSWLAWTHMARDNY----QTATGERSTYTLADG 130 Query: 133 IGVTLDAGTIVDATATG----WRMESGQMLV----NAMHNRKPFDILSARGNLHASAARF 184 + L+ G+ VD R+ +G++LV ++ N +PF + + +G++ A RF Sbjct: 131 SSLMLNTGSSVDIVFDDKQRLLRLRAGEVLVQTAKDSAPNPRPFIVQTGQGSVRALGTRF 190 Query: 185 SFSSYETHSLVAVVQGSA---TLTTPDGMVKMITQGDVVSLSEAGIERSSQSLANAVAWT 241 E + VAV++ + L D ++ G ++ + NA AWT Sbjct: 191 IVRQREDATEVAVLEHAVEVRALGVADPVIIAAGYGGSFGKTDIAALTPLANNVNASAWT 250 Query: 242 EGLFVASDQAVADVIGVLRRHRQGVIRVTRKAAAKRVSGIFNMRMPDAVLRQLAETVALK 301 +G+ +A Q + D + L R+R G++R A R+SG+F + L L ET+ + Sbjct: 251 QGILIADRQRLEDFLAELGRYRPGILRCDPAVADLRISGVFQTSNTEQALNVLQETLPVT 310 Query: 302 VESYGRFLVTV 312 V S R+ VTV Sbjct: 311 VLSRTRYWVTV 321 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.129 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 555,812 Number of extensions: 19515 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 16 Length of query: 315 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 232 Effective length of database: 914,170 Effective search space: 212087440 Effective search space used: 212087440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)