BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2245.p (491 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 330 1e-91 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 140 2e-34 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 130 2e-31 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 107 1e-24 gi|152983061|ref|YP_001352668.1| GntR family transcriptional reg... 82 1e-16 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 330 bits (846), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 180/448 (40%), Positives = 267/448 (59%), Gaps = 7/448 (1%) Query: 32 LVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHVYTRPGA 91 L+++I + + + L G ++PS+R ++ QVSR TV AY++LVA G + +R G+ Sbjct: 30 LIEQIVQLITSRIDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRGS 89 Query: 92 GFFIR----VDNQVANAQTPAVPAPLLTNWRQRLLDPRTLLHRGLGSGDLPPDWLNVPQL 147 GF++R + A A P+ W R + + + G G LP +WL+ + Sbjct: 90 GFYVRDRAPMLTPRAQGLQSAAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDGDLV 149 Query: 148 AATLRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGIDVTPRQVLTTLGATDAINLI 207 A LRAVSR N N YG QG+LPLRQQLQ K+A++ I TP Q +TT G T ++L+ Sbjct: 150 ANALRAVSRQNPNLLLQYGIPQGFLPLRQQLQLKMAELEISATPDQFVTTAGVTQGLDLV 209 Query: 208 VMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGVTRDADGPDITALQNACEQHGPAFY 267 Y+ QPG T+ VDDPG FL+ A G ++G+ R DGPDI L E H P + Sbjct: 210 ARHYI-QPGDTIFVDDPGWFLMFGSFAALGAKVVGIPRLPDGPDIAQLTALAELHRPKLF 268 Query: 268 FCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHATRLASLDQL 327 S+LH+P T LS +AFQ+L++AE+++F IVEDD Y D+ P ATR+A+LDQL Sbjct: 269 IINSILHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQL 328 Query: 328 QHVLYVGSFSKTLGAGMRVGFIAGNPQQIEWLLLYKLVSRASNGSLAERMIYRLLSEGGY 387 V+Y+G FSKTL A +RVGFIA +P+ L K+++ + + ER++YR+LSEG Y Sbjct: 329 NRVIYLGGFSKTLAANLRVGFIATSPEIARQLADRKMLTALTTTEITERVVYRILSEGHY 388 Query: 388 RRHCEQLRARLDQARPRLMAALEALGIVLQHRPDAGLYLWGRLPGDLNAMEVAERMLANG 447 R+H ++LR +L+ R + + +E +GI + AG++ W + D A +AE+ + G Sbjct: 389 RKHTDRLRTKLNAVRDKTIRQMERIGIKIHFHTPAGMFAWTDVGCD--ATILAEKAMEQG 446 Query: 448 YLTAPGPVFSSGEAARSHMRFNVASSDD 475 YL APG +FS + ++MRFNVA+ D Sbjct: 447 YLLAPGSLFSPNQLPSTNMRFNVAAMAD 474 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 130/460 (28%), Positives = 212/460 (46%), Gaps = 33/460 (7%) Query: 52 GDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHVYTRPGAGFFIRVDNQVANAQTPAVPA 111 GD+LPS+R + S VS TV +AY L A G + R +G++ VA A P Sbjct: 23 GDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERSGYY------VAGAAQKLPPE 76 Query: 112 PLLTNWRQRLLDPRTLLHR--------------GLGSGDLPPDWLNVPQLAATLRAVSRS 157 P + P + R GS P + +LA + + + Sbjct: 77 PEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSAFPSPLLFPMARLARAMASSVQQ 136 Query: 158 NINWAAGYGDAQGYLPLRQQLQ-RKLADIGIDVTPRQVLTTLGATDAINLIVMSYLRQPG 216 W+A G LR+Q+ R LAD G+ + +++ T GA DA+NL + + R PG Sbjct: 137 LDPWSAVDDLTPGNPQLRRQIALRYLAD-GLHIHTDEIVITNGALDALNLCLAAVTR-PG 194 Query: 217 MTVLVDDPGSFLLMDRLLASGMHIIGV-TRDADGPDITALQNACEQHGPAFYFCQSLLHS 275 VLV+ P + + L +G+H I V T +G D+ AL A E+H P + + + Sbjct: 195 DAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLAALARAIERHQPKACWLMTTFQN 254 Query: 276 PGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHATRLASLDQLQHVLYVGS 335 P + + ++ ++ L + ++EDD YG+L + P + + D V++ S Sbjct: 255 PLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRPMPAK--AFDSKGLVMHCSS 312 Query: 336 FSKTLGAGMRVGFIAGNPQQIEWLLLYKLVSRASNGSLAERMIYRLLSEGGYRRHCEQLR 395 FSK L G RVG+ A + + KL + + + A+ + L +GGY +H QLR Sbjct: 313 FSKCLAPGYRVGWAAPG-RFTRAVARRKLTTTLAASAPAQAALATYLEKGGYDKHLRQLR 371 Query: 396 ARLDQARPRLMAAL-EALGIVLQ-HRPDAGLYLWGRLPGDLNAMEVAERMLANGYLTAPG 453 L + + M A+ + Q RP G +LW LP +NA+E+ + LA G APG Sbjct: 372 HTLSVQQTQFMEAIARSFPAGTQATRPKGGYFLWLELPAKVNALELHRQALAQGISLAPG 431 Query: 454 PVFSSGEAARSHMRFNVA----SSDDDALRALSSVLERSA 489 P+FS+ + +R N + + AL +L ++++ A Sbjct: 432 PIFSAHHGFTNCIRLNYGHVWDARSEAALASLGQLVQKMA 471 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 116/472 (24%), Positives = 213/472 (45%), Gaps = 25/472 (5%) Query: 32 LVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHVYTRPGA 91 L +++ + E + G++LPS+R ++ ++S TV A+ L + G + + P + Sbjct: 3 LYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQS 62 Query: 92 GFFIRVDNQVANAQTPA---VPAPLLTNWRQR-----LLDPRTLLHRGLGSGDLPPDWLN 143 G+F+RV Q AN + P PL + + L R++ + + G PD Sbjct: 63 GYFVRVPPQSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVPLGSPYPDPSL 122 Query: 144 VP--QLAATLRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGIDVTPRQVLTTLGAT 201 P ++ ++R W G+ L +Q+ R+ + G + P +++ T+GAT Sbjct: 123 FPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGSAIDPNEIVVTVGAT 182 Query: 202 DAINLIVMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGV-TRDADGPDITALQNACE 260 +AINL + + + + G V V+ P + ++ + GM I V T +G D+ AL+ + Sbjct: 183 EAINLCLQA-VGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLAALEAILD 241 Query: 261 QHGPAFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHATR 320 QH A +P + ++ ++ L R ++E+D Y +L H T Sbjct: 242 QHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNEL--YFGDVHPTS 299 Query: 321 LASLDQLQHVLYVGSFSKTLGAGMRVGF-IAGNPQ-QIEWLLLYKLVSRASNGSLAERMI 378 L S D VL+ SFSK+L + R+G+ + G + Q+E L K ++ + ++ + I Sbjct: 300 LKSYDTEGLVLHCASFSKSLTSAYRIGWAMPGRYRDQVEKL---KFLNTLTTPTIPQLAI 356 Query: 379 YRLLSEGGYRRHCEQLRARLDQARPRLMAALEALGI--VLQHRPDAGLYLWGRLPGDLNA 436 L GY H +R Q + AA++ P G LW LP +++ Sbjct: 357 AEYLEHDGYEHHLRHIRKVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVELPPQVDS 416 Query: 437 MEVAERMLANGYLTAPGPVFSSGEAARSHMRFNV----ASSDDDALRALSSV 484 M++ E L G PG +FS+ + +R N ++ +DA+R + + Sbjct: 417 MKLYELALQQGITIGPGYMFSATNGYNNFIRLNYSYPWSAGIEDAIRTIGKL 468 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 9/357 (2%) Query: 134 SGDLP-PDWLNVPQLAATLRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGIDVTPR 192 +G LP P+ V + A V A YG + GY PLR+ + L+ G +TP Sbjct: 41 AGGLPSPETFPVEHMKAAFDNVLSRQGKIALQYGPSDGYAPLREWIADSLSIEGATITPD 100 Query: 193 QVLTTLGATDAINLIVMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGVTRDADGPDI 252 QVL G+ A++L+ L + VLV+ P + + V D G Sbjct: 101 QVLMVSGSQQALDLL-GKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYGLLP 159 Query: 253 TALQNACEQHGPAFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPV 312 A+ + G + H+P +S +R ++ R ++EDD YG L+ Sbjct: 160 EAVDGIAD--GARLLYALPNFHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGALS-- 215 Query: 313 HRPPHATRLASLDQLQHVLYVGSFSKTLGAGMRVGFIAGNPQQIEWLLLYKLVSRASNGS 372 +R ++ +++ V+Y+GSFSK L G+R+G++ G I L K + Sbjct: 216 YRAEPLPKMLTMNP-SGVIYMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHTSQ 274 Query: 373 LAERMIYRLLSEGGYRRHCEQLRARLDQARPRLMAALEALGI--VLQHRPDAGLYLWGRL 430 L + ++Y + +G H +R ++ AL V ++P+ G+++W L Sbjct: 275 LTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWVTL 334 Query: 431 PGDLNAMEVAERMLANGYLTAPGPVFSSGEAARSHMRFNVASSDDDALRALSSVLER 487 P ++ M++ E +A PG F + E ++ +R + + + +R S L + Sbjct: 335 PKHIDCMQLLEEAIAQKVAFVPGAPFYANEPEKNTLRLSFVTVPPEKIREGVSKLAK 391 >gi|152983061|ref|YP_001352668.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 469 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 159/330 (48%), Gaps = 17/330 (5%) Query: 25 DKHSARLLVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGH 84 D+ + L ++I ++ + + LA G +LPS + +A V+R TV AYE+L Sbjct: 10 DRTAKLSLSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQM 69 Query: 85 VYTRPGAGFFI--RVDNQVANAQTPAVPAPLLTNWRQRLLDPRTLLHRGLGSGDLPPDWL 142 + T G + R+ + P P + +++ + P + G+ + + PD L Sbjct: 70 IETFGAKGTRVAPRLHTTAGKPEAPQ-PGAFMKTYQEMMAGP-AIFQLGIPAMEGFPDKL 127 Query: 143 NVPQLAATL-RAVSRSNINWAAGYGDAQGYLPLRQQLQRKLA-DIGIDVTPRQVLTTLGA 200 ++ L + S S++ Y D +G + LR+++ L+ + P QV T G Sbjct: 128 FARARSSNLLKTGSFSSLV----YPDPRGEIELRKEVAGYLSISRNLHCFPEQVFITSGY 183 Query: 201 TDAINLIVMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGVTRDADGPDIT-ALQNAC 259 + + L++ G V +++PG L L + ++I+ V DA+G D+ ++NA Sbjct: 184 SSGLGLVLRVLGLD-GRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGLDVDYGIKNAA 242 Query: 260 EQHGPAFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHAT 319 + A +P T LS +R Q+L A N I+EDD +L RP A Sbjct: 243 DA---ALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGRP--AP 297 Query: 320 RLASLDQLQHVLYVGSFSKTLGAGMRVGFI 349 LASLD+ + V+++GSFSKT+ G+R+GF+ Sbjct: 298 ALASLDEGKRVIHIGSFSKTISPGLRLGFV 327 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,171,775 Number of extensions: 50845 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 7 Length of query: 491 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 404 Effective length of database: 899,382 Effective search space: 363350328 Effective search space used: 363350328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)