BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2238.p (463 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 242 4e-65 gi|152979834|ref|YP_001352756.1| outer membrane efflux protein [... 182 4e-47 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 134 1e-32 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 124 2e-29 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 117 1e-27 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 242 bits (617), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 168/458 (36%), Positives = 245/458 (53%), Gaps = 9/458 (1%) Query: 7 RLLLAWILMLPVAACTLAPEQKHTELSMPSQWRAPHELAPGEGSGHTC---WWAALGGTE 63 ++L + L +A C Q+ + QWR P G+ WW + G +E Sbjct: 2 KILTGFSAALLLAGCATQATQQTLVPEVAPQWRQPQANVDATGTTSVLTRDWWRSFGSSE 61 Query: 64 LSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQGYAERT-RTASDPSSNA 122 L LL + ++++ AA ARV QA A A+ AGA LLPEL A R R D + A Sbjct: 62 LDSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNGRLGGDGNGTA 121 Query: 123 ----HVLALAMNYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYLQTVAS 178 + L+ YELD WG ++ SA+ A + ++ + +++ A VA ++LQTV Sbjct: 122 TGTVYQAGLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASSWLQTVGL 181 Query: 179 RQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQRQAAAGL 238 R+R A+ ++ +A + L + S+ RAG EL ++R L A + + ++QA L Sbjct: 182 RERVAIADLSVASAQRLLDVIESRARAGAANPLELAQQRGVLAAQMRARAAIRQQAEDSL 241 Query: 239 AALAALLGLPVQEVRVSLEGLDTLQVPTQQAALPPSLLLRRPDIVAMEHQLAAADADVTI 298 LA LLG + ++ L+ LQ P A LP LL+RRPDI E QL+ ADA++ Sbjct: 242 TTLAVLLGRNPSLLVLAGTELNKLQAPAVVAGLPADLLVRRPDIARAEAQLSGADANIIA 301 Query: 299 ARAALLPSLNLGASLGIGDERWR-LPGHPVYELVAGLTMPIFNGGRLRAEREQRSARRDE 357 ARAA+LP ++LG + G R + +PVY L AGL PIFN GRL A R+ A+R+E Sbjct: 302 ARAAMLPRISLGGDITAGSNRVSSVFDNPVYSLAAGLAAPIFNAGRLAAGRDLALAQREE 361 Query: 358 VLALYRAGIINALAEVESALQGLDASRSERRQQQQALAESSELVRLASSRHAAGFVDVLA 417 +LA YR I+ A +VE AL + ++R Q++ L ++ LA SR+ AG L Sbjct: 362 LLANYRRAIVAAFGDVEVALNAVAGIDAQRIAQEEELRQAQRAFNLAESRYRAGAETSLT 421 Query: 418 LDDARAELYAISDVAVEKRLTELEAAVTLYKALGGEWR 455 L DA+ LYA D A + R L+AAV+LYKALGG W+ Sbjct: 422 LLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGGWQ 459 >gi|152979834|ref|YP_001352756.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 471 Score = 182 bits (462), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 232/444 (52%), Gaps = 13/444 (2%) Query: 21 CTLAPEQKHTELSMPSQWRAPHELAPGEGSGHTCWWAALGGTELSDLLRRARAGNFELEA 80 C + L MP+ W E + WW G ELS L+ +A A N +L Sbjct: 25 CAGRIDATKPNLEMPASW---TEASSATAELQRDWWRGFGSDELSGLIDQALANNPDLNI 81 Query: 81 AKARVRQADALASAAGAPLLPELALQ-----GYAE--RTRTASDPSSN-AHVLALAMNYE 132 A RV QA+ A AGA L P L + G ++ +T TA+ + N + +ALA+ YE Sbjct: 82 AAERVTQAEITARLAGASLFPLLTVSANTGVGSSKPGQTATATGWTRNESSGVALAVAYE 141 Query: 133 LDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYLQTVASRQRAALTRAAIENA 192 +D+WG + + A A+ Y E ++++L VA AY QT+A R R + + + A Sbjct: 142 VDVWGRVAAVASGANASLNASRYDMETVRLTLTTGVANAYFQTLALRVRLKVAQENLAIA 201 Query: 193 LQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQRQAAAGLAALAALLGLPVQEV 252 + + V ++YR G +A +++R+R A+LA + L+ Q Q ++ALA LLG Q + Sbjct: 202 EKVYSIVEARYRFGSASALDMSRQRGAVLAQRNILLPLQVQERQTVSALAILLGRQPQAL 261 Query: 253 RVSLEGLDTLQVPTQQAALPPSLLLRRPDIVAMEHQLAAADADVTIARAALLPSLNLGAS 312 +V+ + L+ L VP LP +L+ RRPD+ ++E QL AADA+V ARAALLP+++L + Sbjct: 262 QVAAQDLNVLTVPEVSPGLPSTLITRRPDLASVEAQLFAADANVAAARAALLPTISLTGA 321 Query: 313 LGIGDERWRLPGHPVYE--LVAGLTMPIFNGGRLRAEREQRSARRDEVLALYRAGIINAL 370 G G+P Y L A +F+G RLR + E + R +++ YR + +L Sbjct: 322 AGNSSAALLALGNPAYSVGLTASFVQTLFDGNRLRLQVETSESVRRQLVESYRRTVYASL 381 Query: 371 AEVESALQGLDASRSERRQQQQALAESSELVRLASSRHAAGFVDVLALDDARAELYAISD 430 EV+ AL + ++ + Q + E+ ++L+ R+ G D+ L DA+ L+A D Sbjct: 382 KEVDDALSNASRNLAQEQAQIEIRNEARRALQLSELRYREGADDLNTLLDAQRTLFAADD 441 Query: 431 VAVEKRLTELEAAVTLYKALGGEW 454 ++RL L ++K+LGG W Sbjct: 442 QVAQQRLLRLTGTTDVFKSLGGGW 465 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 209/451 (46%), Gaps = 20/451 (4%) Query: 18 VAACTLAPEQKHTELSMPSQWRAPHELAPGEGSG-HTCWWAALGGTELSDLLRRARAGNF 76 ++AC++AP+ + + + + P + + W L L+ A A N Sbjct: 14 LSACSMAPKYVRPDAPVAADYGVPSKADNNQVRAVDIGWRNFFTDPRLQVLIGNAIANNR 73 Query: 77 ELEAAKARVRQADALASAAGAPLLPELALQGYAERTRT--------ASDPSSNAHV-LAL 127 +L A R+ +A AL + A LLP L + R R +S SSN V L L Sbjct: 74 DLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVVSSNYQVGLGL 133 Query: 128 AMNYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYLQTVASRQRAALTRA 187 A +ELD +G +S S +A +T Q A +ISL + VA+AYL + ++ L R Sbjct: 134 AA-FELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSERSFAEQQDLARQ 192 Query: 188 AIENALQSLAAVNSQYRAGHVTATELTRRRRALL--ALQQQLVSHQRQAAAGLAALAALL 245 E+ +++ ++ G +A +L R ALL A +L++ QRQ A + AL L+ Sbjct: 193 TYESRVEAYKLSKQRFEVGASSALDL-RNDEALLQTARAAELLA-QRQRAQAMNALTLLV 250 Query: 246 GLPVQEVRVSLEGLDTLQVPTQ-QAALPPSLLLRRPDIVAMEHQLAAADADVTIARAALL 304 G P+ ++ + + L + + T A LP LL +RPDI + E L +A+A++ ARAA Sbjct: 251 GQPLTDLPPA-QALSSQTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANANIGAARAAFF 309 Query: 305 PSLNLGASLGIGDERW---RLPGHPVYELVAGLTMPIFNGGRLRAEREQRSARRDEVLAL 361 P ++L A LG G + L +PIF+ GR R R+D +A Sbjct: 310 PRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLAEVRKDIAVAN 369 Query: 362 YRAGIINALAEVESALQGLDASRSERRQQQQALAESSELVRLASSRHAAGFVDVLALDDA 421 Y I A EV AL D + Q+ +E + A+ R G L + DA Sbjct: 370 YEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFATQRFQNGIASSLDVLDA 429 Query: 422 RAELYAISDVAVEKRLTELEAAVTLYKALGG 452 + EL+ V+ RLT L AV LY++LGG Sbjct: 430 QRELFTAQLSLVQVRLTRLTNAVDLYRSLGG 460 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 131/472 (27%), Positives = 199/472 (42%), Gaps = 27/472 (5%) Query: 6 CRLLLAWILMLPVAACTLAPEQKHTELSM----PSQWRAPHELAPGEGSGHTCWWAALGG 61 +L A +L + C+LAP + +L + P Q A +P + W Sbjct: 10 VQLSYATVLSSILVGCSLAPVYERPDLPVSKTWPDQRLANERNSPDVTASEIDWKEFFID 69 Query: 62 TELSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQGYAERTRTA------ 115 LS +++ A N +L A + +A AL GA LP + + R RT Sbjct: 70 QNLSQVIQIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPADLNDK 129 Query: 116 --SDPSSNAHVLALAMNYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYL 173 SD +S ++ELD +G ++ S++A ++ AT + + +I+L + VA Y Sbjct: 130 GFSDVTSTYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEVAMRYQ 189 Query: 174 QTVASRQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQRQ 233 A + L + L S A S G + +L + L A + L RQ Sbjct: 190 ALAADHRLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARVALAQQTRQ 249 Query: 234 AAAGLAALAALLGLPVQEVRVSLEGLDTL-----QVPTQQAALPPSLLLRRPDIVAMEHQ 288 A AL L+G + + D L +P LP L+ RPDI E Sbjct: 250 RAVDQNALRLLVGATIDPSLLPSGMSDALPAMLADIPV---GLPSDLISTRPDIRQHEAI 306 Query: 289 LAAADADVTIARAALLPSLNLGASLGIGDERWR---LPGHPVYELVAGLTMPIFNGGRLR 345 L + +A + ARAA P ++L SLG G + + +++PIF+ GR R Sbjct: 307 LRSENASIGAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQVSLPIFDVGRNR 366 Query: 346 AEREQRSARRDEVLALYRAGIINALAEVESALQGLDASRSERRQQQQALAESSELVR--L 403 A A RD +A Y I A EV AL G D + E R E +E VR L Sbjct: 367 ANLNVAKADRDIAIAEYEKSIQIAFREVADALAGTDTLKEELRAS--TAQERAERVRYVL 424 Query: 404 ASSRHAAGFVDVLALDDARAELYAISDVAVEKRLTELEAAVTLYKALGGEWR 455 + R+ +G+ L DA+ L+AI + L E++ + LYKALGG W+ Sbjct: 425 SKQRYESGYASYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGGWK 476 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 123/474 (25%), Positives = 203/474 (42%), Gaps = 29/474 (6%) Query: 4 RYCRLLLAWILMLPVAACTLAPEQKHTELSMPSQWR-----APHEL-------APGEGSG 51 ++ L + L +A C+ A + +L +P+ +R +EL AP + Sbjct: 3 KFNLALSTMVAALVLAGCSTARPPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKD 62 Query: 52 HTCWWAALGGTELSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQGYAER 111 WW G +LS+L+ A N L A ARV+ A A+A A ++ R Sbjct: 63 RGAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTR 122 Query: 112 TRTASDPSSNAHVLALAMNYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQA 171 + A S+ + L+ YE+DL+G ASR+A+ A ++ ++L + VAQ Sbjct: 123 SGNAQGASTQ-YRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQSDVAQQ 181 Query: 172 YLQTVASRQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQ 231 Y + + + ++L ++ AG + ++ + + +L + Sbjct: 182 YFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAELEGVK 241 Query: 232 RQAAAGLAALAALLGLPVQEVRVSLEGLDTLQVPTQQAALPPSLLLRRPDIVAMEHQLAA 291 RQ A ALA LLG E + + L V T + LP LL RRPDI + QLAA Sbjct: 242 RQRAQRDHALAILLGKAPAEFTLPVAPL-AAAVVTVPSGLPSDLLERRPDIAQAQRQLAA 300 Query: 292 ADADVTIARAALLPSLNLGASLGI-----------GDERWRLPGHPVYELVAGLTMPIFN 340 + A + A+AA P L L S G W L PV + L+MP+F+ Sbjct: 301 SSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWML--GPVVGTI--LSMPLFD 356 Query: 341 GGRLRAEREQRSARRDEVLALYRAGIINALAEVESALQGLDASRSERRQQQQALAESSEL 400 GGR ++ + A + ++A YR ++ +VE L L + + ++QA+ + Sbjct: 357 GGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAVNSAQLA 416 Query: 401 VRLASSRHAAGFVDVLALDDARAELYAISDVAVEKRLTELEAAVTLYKALGGEW 454 RLA +R+ G + DA+ + + A+V L +ALGG W Sbjct: 417 SRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGGGW 470 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.129 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 761,279 Number of extensions: 24494 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 12 Length of query: 463 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 376 Effective length of database: 899,382 Effective search space: 338167632 Effective search space used: 338167632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)