BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2237.p (648 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [J... 600 e-173 gi|152981558|ref|YP_001355169.1| ATP-binding/permease fusion ABC... 520 e-149 gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 173 3e-44 gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase com... 168 1e-42 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 134 2e-32 >gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [Janthinobacterium sp. Marseille] Length = 657 Score = 600 bits (1547), Expect = e-173, Method: Compositional matrix adjust. Identities = 322/651 (49%), Positives = 447/651 (68%), Gaps = 19/651 (2%) Query: 7 PLIELRDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRP 66 PLIELR + K Y G G VEV+ GI L I+ GEFVA++G+SGSGKSTLM+ILGCLDRP Sbjct: 17 PLIELRGVTKTYRNG--GLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRP 74 Query: 67 NAGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQ 126 GSY G+DV + +ELA LRR+ FGFVFQ Y+LI + A++NV++PA+Y+GLPP + Sbjct: 75 TTGSYHFMGRDVSGFDRDELAMLRRDDFGFVFQSYNLIASASAVENVEVPAMYSGLPPAE 134 Query: 127 RQKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSG 186 R RA LLA LGL R HHRP QLSGGQQQRVSI+RAL+NGG+IILADEPTGALDSKSG Sbjct: 135 RHARAQALLAELGLAERSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSG 194 Query: 187 AEVVQLLHELAAAGHTVILITHDHAIAAQADRRIEIRDGTVVADSGPVRPPERSPCGS-- 244 +V++LL +L+A GHTV+LITH +A A R IEI+DG +++D GP ++SP + Sbjct: 195 QDVMKLLADLSARGHTVLLITHAKEVADHAQRLIEIKDGHILSDPGPA---QQSPTQATF 251 Query: 245 -----AGQSSDLSLRAPWALRETLLDAWRALGVNRFRTLLTLLSIIIGVASVIVMMAIGL 299 AG S L+ + E A R+L N FR++LTLL I+IGVASVI M+AIG Sbjct: 252 IRPVVAGVGSRLA-----DMLEAAKMALRSLRANFFRSVLTLLGIVIGVASVIAMLAIGD 306 Query: 300 GTQAQVIEKMALFGSNRMYVVPGAEQGRTLG--GVLMPEDVALVASIPNVAIAMPFREGN 357 G + +V+E+++ GSN + V PG R L+ +DV + +PNV A+P + + Sbjct: 307 GAKQEVVERISAMGSNLLLVRPGVPNQRGFNSTATLVVDDVRAIDELPNVLAAVPEQSSS 366 Query: 358 VTLRAGRVDVQSRIWAVTSDAPRVLNWKTVRGEFFSRADETSLAAVAVLGKKVRQRLFGQ 417 VTLR G D + + ++ P W +G FFS DE++ AAVAVLGK V LFG+ Sbjct: 367 VTLRFGTSDTSTSVTGTSAKFPLARQWPVAQGTFFSEEDESNYAAVAVLGKTVATALFGE 426 Query: 418 QQAMGRYLLVNDVPFRVIGELAEKGLVTGDSDDDDVILVPFSSATRRVLGQTELSWISIL 477 +G ++LVN++ F+V+G ++E+G SD DDV+ VP+S+++ R+ GQ L +++ Sbjct: 427 DNPIGEFVLVNNLLFQVVGVMSERGASPMGSDQDDVVFVPYSTSSLRLSGQRFLRNVTVA 486 Query: 478 LDDVSQSEATAQEITRVMQQVRRVKDFQVFNQAALIAAQKETQQTLTLMLGLIAAISLVV 537 +++V + T +E+ +++ + D+Q+ N A+++ A ++TQ TLT++LG IAAISL+V Sbjct: 487 VENVDHIDNTQEEVDKLLLERHGTVDYQIRNMASIMEAMEQTQNTLTILLGSIAAISLLV 546 Query: 538 GGIGVMNIMLMSVAERTREIGIRLAVGARQGDIRRQFLCEAMVVSLVGGGAGAIIGIAIG 597 GGIGVMNIML+SV ERTREIGIR+A GAR+ +I +QFL EA+VVS +GG G + G+A Sbjct: 547 GGIGVMNIMLVSVTERTREIGIRMATGARESNIMQQFLIEAVVVSAIGGAIGVVGGLATA 606 Query: 598 VLLILAGVHLIFSLGTILTAFASALLTGLAFGFMPASKAARLDPVQALSSE 648 ++ G + +SL ++ AF A +TGL FG++PA KAA+LDPV ALS+E Sbjct: 607 AVIDAFGTPIKYSLTPVVLAFGCAFMTGLVFGYLPAKKAAQLDPVVALSAE 657 >gi|152981558|ref|YP_001355169.1| ATP-binding/permease fusion ABC transporter [Janthinobacterium sp. Marseille] Length = 595 Score = 520 bits (1340), Expect = e-149, Method: Compositional matrix adjust. Identities = 300/595 (50%), Positives = 395/595 (66%), Gaps = 3/595 (0%) Query: 57 MHILGCLDRPNAGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMP 116 MH+LGCLDRP++GSY G+DV ++++ELA LRRE FGFVFQGYHLI T A +NV++P Sbjct: 1 MHLLGCLDRPSSGSYLFSGRDVETLDSDELAWLRREAFGFVFQGYHLIATESARENVEVP 60 Query: 117 ALYAGLPPQQRQKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADE 176 A+YAG+ R RA+ LL RLGLG +L +RP QLSGGQQQRVSIARAL+NGG+IILADE Sbjct: 61 AIYAGMSEADRAARASALLTRLGLGDKLDNRPSQLSGGQQQRVSIARALMNGGRIILADE 120 Query: 177 PTGALDSKSGAEVVQLLHELAAAGHTVILITHDHAIAAQADRRIEIRDGTVVADSGPVRP 236 PTGALDSKSGAEV+ LL+ELA AGHT+ILITHD +A QA R IEIRDG +V DSG Sbjct: 121 PTGALDSKSGAEVMALLNELADAGHTIILITHDRDVADQARRVIEIRDGEIVGDSGVSAV 180 Query: 237 PERSPCGSAGQSSDLSLRAPW-ALRETLLDAWRALGVNRFRTLLTLLSIIIGVASVIVMM 295 + P Q+ + + W LRE AWR + +NR RT LTLL I+IGVASVIVM+ Sbjct: 181 KQALPAPDMTQAGRDAGASFWDDLREAARTAWRGMRMNRTRTGLTLLGIVIGVASVIVML 240 Query: 296 AIGLGTQAQVIEKMALFGSNRMYVVPGAEQGRTLGGVLMPEDVALVASIPNVAIAMPFRE 355 A+G G + +VI++M G+ MY+ G G L ED+ VA++P + MP Sbjct: 241 AVGEGAKQRVIDEMGSLGTTIMYLGSGHPSNGGPPGRLTIEDLDAVAALPQIGHVMPIIG 300 Query: 356 GNVTLRAGRVDVQSRIWAVTSDAPRVLNWKTVRGEFFSRADETSLAAVAVLGKKVRQRLF 415 VT+R G VD Q +A P V W+ +G FF+ A++ LA V V+G K + F Sbjct: 301 DPVTVRYGNVDRQVYAFASAYVMPLVHRWRVGKGRFFTPAEDRDLAPVVVIGHKAWKNFF 360 Query: 416 GQ-QQAMGRYLLVNDVPFRVIGELAEKGLVTGDSDDDDVILVPFSSATRRVL-GQTELSW 473 +G+ +L+ D PF VIG +AE+G +G D D+++ +P++S RV + E + Sbjct: 361 PDGSDPIGKQILIVDAPFEVIGVMAERGADSGSQDYDEMVFIPYNSGRMRVYDARAEPDY 420 Query: 474 ISILLDDVSQSEATAQEITRVMQQVRRVKDFQVFNQAALIAAQKETQQTLTLMLGLIAAI 533 + Q + + +++ + R DF++ N AA + A +T + +MLGLIAA+ Sbjct: 421 TVVEAASEDQVQEAEAAMKKLLIERRGRDDFRIGNAAAKLQAAAQTSNAMKMMLGLIAAV 480 Query: 534 SLVVGGIGVMNIMLMSVAERTREIGIRLAVGARQGDIRRQFLCEAMVVSLVGGGAGAIIG 593 SLVVGGIGVMN+MLM+V ERTREIGIR+A GAR+ DI RQFL EA++VS+VGG G + G Sbjct: 481 SLVVGGIGVMNVMLMTVRERTREIGIRMATGARERDILRQFLTEAVLVSVVGGVIGVVSG 540 Query: 594 IAIGVLLILAGVHLIFSLGTILTAFASALLTGLAFGFMPASKAARLDPVQALSSE 648 + IG L+ V +IFSL I+ AFA A+ TGL FG+MPA KAA LDPV AL+SE Sbjct: 541 LTIGAALLFWNVAVIFSLSAIIGAFACAVATGLIFGYMPAKKAAGLDPVIALASE 595 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 139/218 (63%), Gaps = 3/218 (1%) Query: 8 LIELRDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRPN 67 ++ R+L K + G+ V V+K ++L I GE VA+VG+SGSGKSTL+H+LG LD P+ Sbjct: 5 VLACRNLAKTFTQGKYS--VNVLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPS 62 Query: 68 AGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQR 127 AGS + QD ++ ++ LR ++ GFV+Q +HL+ ALDNV MP + +P + Sbjct: 63 AGSVTLLNQDFATLDEKKRGDLRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEA 122 Query: 128 QKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSGA 187 ++A +LAR+GL R+ H PG+LSGG++QRV++ARAL+ +LADEPTG LD + Sbjct: 123 HEKARAILARVGLEHRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAH 182 Query: 188 EVVQLLHELAAA-GHTVILITHDHAIAAQADRRIEIRD 224 + L+ EL+ G I++THD +A DR + + D Sbjct: 183 KTFDLMLELSRTLGTAFIIVTHDVELATHCDRIMRLSD 220 >gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 145/229 (63%), Gaps = 9/229 (3%) Query: 3 SAAIPLIELRDLRK--AYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHIL 60 S P IE +L K A GE + +++ + T+ AG+ +A+VG+SGSGKSTL+ +L Sbjct: 5 STLYPAIEAINLTKRVADATGE----LTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLL 60 Query: 61 GCLDRPNAGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYA 120 LD P+ G+ ++ G D+ ++ + A LR+ GFVFQ + L+ L+AL+NV +P Sbjct: 61 AGLDTPSDGTVKLDGTDIFALDEDGRAGLRKSKLGFVFQSFQLLGHLNALENVMLPLELR 120 Query: 121 GLPPQQRQKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGA 180 G + +++A +LAR+GL RL H P LSGG+QQRV++ARA ++ ++ ADEPTG+ Sbjct: 121 G--DGKAKEKAEAMLARVGLSTRLKHYPKYLSGGEQQRVALARAFVSEPPLLFADEPTGS 178 Query: 181 LDSKSGAEVVQLLHELA-AAGHTVILITHDHAIAAQADRRIEIRDGTVV 228 LD+ +G V+QL+ EL G T++L+THD +IAA R I I G +V Sbjct: 179 LDAATGEAVIQLMFELNRERGSTLVLVTHDPSIAALCKRTITISAGRLV 227 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 8 LIELRDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRPN 67 +IE + K Y V + ISL++ GE V L G SG+GKSTL+ ++ ++RP+ Sbjct: 1 MIEFHQVSKKYTQN-----VTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPS 55 Query: 68 AGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQR 127 GS + G D+ +++ L LRR G +FQ L+ L NV +P + G Sbjct: 56 EGSVIVSGHDISRIKTSGLPYLRR-NLGLIFQQQRLLADRSVLANVMLPLIVCGASRPDA 114 Query: 128 QKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSGA 187 ++RA L ++GL P LSGG+QQRV+IARA++N QIILADEPT LD + Sbjct: 115 ERRARAALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAAN 174 Query: 188 EVVQLLHELAAAGHTVILITHDHAIAAQADRRIEIRDGTVV 228 +V+ L + G T ++ THD A R I + G ++ Sbjct: 175 KVLDALKAFHSVGVTCLISTHDEQFLDTATRVIYLDHGRII 215 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,335,535 Number of extensions: 52698 Number of successful extensions: 421 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 66 Length of query: 648 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 559 Effective length of database: 891,988 Effective search space: 498621292 Effective search space used: 498621292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)