BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2236.p (391 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982001|ref|YP_001355170.1| ABC export system, membrane fus... 325 3e-90 gi|152981910|ref|YP_001352754.1| multidrug efflux system transme... 234 7e-63 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 64 2e-11 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 60 3e-10 gi|152982933|ref|YP_001353408.1| cation efflux system transmembr... 59 6e-10 >gi|152982001|ref|YP_001355170.1| ABC export system, membrane fusion protein [Janthinobacterium sp. Marseille] Length = 392 Score = 325 bits (833), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 181/367 (49%), Positives = 243/367 (66%), Gaps = 4/367 (1%) Query: 26 WSLLRERETIETVLVNRGDLESSISAMGTLQARNYVDVGAQASGEIRRINVAAGSKVVQG 85 WS R E V RG++E++++A+GTLQ + V+VGAQ SG++ +++V G V +G Sbjct: 29 WSGNRSDAQFEVAPVARGNIEATVTAIGTLQPMSSVEVGAQVSGQVLKLHVQPGDVVKKG 88 Query: 86 QLIAEIDPAAQQAKLDTDRANLENLRAQLLEQVANGDLAQQQLERQQRMQAEGSTREEDV 145 QL+AEID + QA +D RA L+AQL EQ A L+ QQ +RQQ+M + STR EDV Sbjct: 89 QLLAEIDASVLQATVDAGRAQQNELQAQLAEQRAQHRLSSQQHDRQQQMHKDESTRLEDV 148 Query: 146 QIAQNALRVAHARIASLRAQLAGAASTVQGSLVQLGYTRIFAPMNGTVVTLDARVGQTLN 205 Q A+ L A ARIA +A++ S+++ +LGYTRI+APM GTV+ +DA+ GQTLN Sbjct: 149 QTAEANLAAAVARIAQTQARIVQTQSSLKADEARLGYTRIYAPMGGTVIGIDAKEGQTLN 208 Query: 206 ATYQTPRIMRIADLTTMTVWTQVSEADIRHVREGMPAWFSTL-GDDRRWRGQVRQILPAP 264 ATYQTP +MRIADL+ MTVWT VSEADIR V+ G A+F+TL GD RRW G+VRQ+LPAP Sbjct: 209 ATYQTPTLMRIADLSAMTVWTTVSEADIRRVKAGQAAYFTTLAGDRRRWTGEVRQVLPAP 268 Query: 265 ALAAGGELQDAGKAGATASKVVFYTVLLDVDNPDGTLRPQMSAQVHFIAQTVQGALLAPL 324 +AA + + SKVV YTVL DVDN D L PQM+AQV FI + + L+APL Sbjct: 269 PVAAATQ---SSPNQTPVSKVVQYTVLFDVDNKDAELLPQMTAQVSFITASARDVLVAPL 325 Query: 325 AALQAIPGSSAQYRAQVLQADGRIAERQLRTGLNDRLQVEVLAGLAEGERLVTRRETYRP 384 +ALQ + Y A++L +D + R++R G+NDRL V+VL GL EGE+L+T + Sbjct: 326 SALQPVEQKPQVYTARILGSDDKPQAREVRAGVNDRLAVQVLEGLKEGEKLITGEVVAQS 385 Query: 385 INGRVSW 391 R W Sbjct: 386 KTRRFQW 392 >gi|152981910|ref|YP_001352754.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 570 Score = 234 bits (597), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 136/328 (41%), Positives = 191/328 (58%), Gaps = 22/328 (6%) Query: 13 LAVLLALLAGLLWWSLLR------ERETIETVLVNRGDLESSISAMGTLQARNYVDVGAQ 66 +A L+ LLA +W + RE + V RGD++ ++A GT+Q YVDVGAQ Sbjct: 21 IAFLIVLLAAGGYWGWKKFYGKKDPREIYQVAEVQRGDIQDLVTATGTVQPLEYVDVGAQ 80 Query: 67 ASGEIRRINVAAGSKVVQGQLIAEIDPAAQQAKLDTDRANLENLRAQLLEQVANGDLAQQ 126 SG+++++ + GS V +G L+AEIDP A +D RA L N A + ++ + LA Sbjct: 81 VSGQLKKLYIEVGSVVKEGDLLAEIDPTVFLATVDARRAGLRNQLATMKDRESQLALATL 140 Query: 127 QLERQQRMQAEGSTREEDVQIAQNALRVAHARIASLRAQLAGAASTVQGSLVQLGYTRIF 186 Q RQ+ + A +T E +Q A+ LR A A+I +L+AQ+ ST++ L Y +I+ Sbjct: 141 QYNRQKNLMAADATTTESLQTAEATLRSAKAQIDALQAQIEQTQSTLRADEANLNYAKIY 200 Query: 187 APMNGTVVTLDARVGQTLNATYQTPRIMRIADLTTMTVWTQVSEADIRHVREGMPAWFST 246 APM+GTVV+L AR GQTLNA P I+RIADL+TMTV TQVSEA++ +R+GM +F+T Sbjct: 201 APMDGTVVSLTARQGQTLNANQTAPTILRIADLSTMTVQTQVSEAEVGKLRKGMEVYFTT 260 Query: 247 LGDD-RRWRGQVRQILPAPALAAGGELQDAGKAGATASKVVFYTVLLDVDNPDGTLRPQM 305 LG RRW G +R++ P P + + VV Y L DV N + L P M Sbjct: 261 LGSQGRRWYGALRKVEPTPTV---------------TNNVVLYNALFDVPNKNQALMPSM 305 Query: 306 SAQVHFIAQTVQGALLAPLAALQAIPGS 333 + QV FIA T + ALL P AA+ GS Sbjct: 306 TTQVFFIAATARDALLVPTAAVTTSRGS 333 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 152/347 (43%), Gaps = 52/347 (14%) Query: 42 RGDLESSISAMGTLQARNYVDVGAQASGEIRRINVAAGSKVVQGQLIAEIDPAAQQAKLD 101 R D+ +++A+G++ A N V Q SG +++IN G +V GQL+A+IDP A QA L Sbjct: 78 RQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQIDPRAFQATLG 137 Query: 102 T-------DRANLENLR---AQLLEQVANGDLAQQQLERQQRM--QAEGSTREEDVQIAQ 149 D+A L+N R A+ + ++ + +QQL+ Q+ + Q EG+ + + + Sbjct: 138 QAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQEALVRQLEGTVKSDQGTVDS 197 Query: 150 NALRVAHARIASLRAQLAGAASTVQGSLVQLGYTRIFAPMNGTVVTLDARVGQTLNATYQ 209 L++++ R+ + A G + G++VQ T NG V+ R + + Sbjct: 198 AKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADT------NGVVIITQTR---PIALVFS 248 Query: 210 TPRIMRIADLTTMTVWTQVSEADIRHVREGMPAWFSTLGDDRRWRGQVRQILPAPALAAG 269 P A++ +T + +E + AW DR + ++ A Sbjct: 249 VPS----ANVPAITARLRANET------VAVEAW------DRTGKTKL----------AT 282 Query: 270 GELQDAGKAGATASKVVFYTVLLDVDNPDGTLRPQMSAQVHFIAQTVQGALLAPLAALQA 329 G++ A + + L N D L P + V ++ L P AA+ Sbjct: 283 GQVATVDNAIDVTTDTIKVKALF--PNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAV-- 338 Query: 330 IPGSSAQYRAQVLQADGRIAERQLRTGLNDRLQVEVLAGLAEGERLV 376 + GS Y V+ AD ++ R ++ G D + + A L GE++V Sbjct: 339 LRGSQGFY-VYVVNADSTVSTRVVKPGAIDSGWMAIEAKLEAGEKVV 384 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 46/331 (13%) Query: 53 GTLQARNYVDVGAQASGEIRRINVAAGSKVVQGQLIAEIDP--AAQQAKLDTDRANLENL 110 GTLQ + A+ +G + R G V +G L+A ID AQQ L Sbjct: 91 GTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVIDTPEVAQQ---------LNEA 141 Query: 111 RAQLLEQVANGDLAQQQLERQQRMQAEGSTREEDVQIAQNALRVAHARIASLRAQLAGAA 170 +A + N LA+ ER ++ + ++D+ +NAL VA A S +A Sbjct: 142 KATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAADNSSKA------ 195 Query: 171 STVQGSLVQLGYTRIFAPMNGTVVTLDARVGQTLNATYQTPRIMRIADLTTMTVWTQVSE 230 TVQ QLGY+RI AP +G V + +G +++ T + +A + V+ V + Sbjct: 196 -TVQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYVYVPQ 254 Query: 231 ADIRHVREGMPAWFSTLGDDRRWRGQVRQILPAPALAAGGELQDAGKAGATASKVVFYTV 290 + ++ G +T+G + +I P G++ A AGA + V Sbjct: 255 SYSTQIKAG-----NTVGI------TLNEI---PGKVFDGKI--ARTAGAIDTVTRTLQV 298 Query: 291 LLDVDNPDGTLRPQMSAQVHFIAQTVQGALLAPLAALQAIPGSSAQYRAQ-----VLQAD 345 +D+ NPDG L P AQV A + L IP ++ +R + V+ D Sbjct: 299 AIDLPNPDGVLLPGAYAQVAIKASGGSASSL-------TIPNNTLLFRPEGPRVAVVGDD 351 Query: 346 GRIAERQLRTGLNDRLQVEVLAGLAEGERLV 376 G++ + + + +E+ +G+ ++L+ Sbjct: 352 GKVRLQPVVIARELGVDIELASGVTAQDKLI 382 >gi|152982933|ref|YP_001353408.1| cation efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 497 Score = 58.5 bits (140), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 28/193 (14%) Query: 187 APMNGTVVTLDARVGQTLNATYQTP--RIMRIADLTTMTVWTQVSEADIRHVREGMPAWF 244 +P++G + L R G + TP I ++A L + + +V EA VR GM Sbjct: 222 SPVSGVITELSVRDGAMV-----TPGMTIAKVAGLNKVWLVAEVPEALSNTVRSGMAVET 276 Query: 245 STLGD-DRRWRGQVRQILPAPALAAGGELQDAGKAGATASKVVFYTVLLDVDNPDGTLRP 303 + GD +R++ GQVR+ILP G + AT + L++DN DG+L P Sbjct: 277 TFSGDANRKYNGQVREILP-------------GISNATRT----LQARLELDNRDGSLTP 319 Query: 304 QMSAQVHFIAQTVQGALLAPLAALQAIPGSSAQYRAQVLQADGRIAERQLRTGLNDRLQV 363 M +V A+ LL P A+ A + Q+ V+ + + + TG + Sbjct: 320 GMLMRVRLDAEKPVSRLLVPSEAVIA---NGKQFVVLVVGENNSMQPMVVTTGRDIGNDT 376 Query: 364 EVLAGLAEGERLV 376 E+L+GL+EG+++V Sbjct: 377 EILSGLSEGQKVV 389 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 675,174 Number of extensions: 23005 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 11 Length of query: 391 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 306 Effective length of database: 906,776 Effective search space: 277473456 Effective search space used: 277473456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)