BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2233.p (567 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 96 6e-21 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 89 7e-19 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 82 1e-16 gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPa... 74 2e-14 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 74 2e-14 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 146/575 (25%), Positives = 248/575 (43%), Gaps = 57/575 (9%) Query: 12 RELFLLLRPFSAWILLSAVTGIIAGMATVALLAMVNQV---------LAATMKVNGEALL 62 R L L P+ +L+ + I+A AT+A+ Q+ + T +N + Sbjct: 18 RGLLKFLLPYKKQFVLAGIALIVAAAATLAIPYAFRQMIDLGFGANGMHDTSSINTYFIA 77 Query: 63 IFVALCVAALIGRALSHIAMNRVGQDLVAQIRMRLAQKILSAPIDALERYRSYRLIPVLT 122 +F CV A I A ++ +G+ + A +R + +++ E +S ++ +T Sbjct: 78 LFGVACVLA-IATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRIT 136 Query: 123 QDVDMISDMIFV-LATTLVSVVTVLGCLAFLAWLSLPLLGILVLALVLGGAIQVW--AQV 179 D +I +I ++ L + + G L L + S+ L I+++ L VW +V Sbjct: 137 TDTTLIQTLIGTSISMALRNALLFAGGLVMLFFTSIKLSSIILVTLAFVVLPIVWFGRRV 196 Query: 180 KGVAGFWKARDHEEELHKAYRDISQGAKEL-----RMQRGRRSRMFRRRIEHTIKAIRDV 234 + ++ RD ++ + D S A E+ +Q ++ +R T++ Sbjct: 197 RTLS-----RDSQDRVA----DASALAGEILNAMPTVQAYTHEKIEAKRFGQTVENAFKT 247 Query: 235 NSRAINIYVLAAAYGSALYFLLIALILGWAAFHPVDMAVLSG-----FVLILLFLKGPVE 289 R I L L F I +L W H V +SG F+L + G + Sbjct: 248 AMRRIRARSLLTMIAILLVFGAIVFVL-WLGAHAVIDGSMSGGQLGQFILYSAIVAGAIG 306 Query: 290 QIMGVLPEVGRAKVAFQRIAELSASFANPEPHLHLDGSAPPATLE-EGIELREVRYAFPS 348 + VL + RA A +R+ EL S +P S PP + L V + +PS Sbjct: 307 ALSEVLGDAQRAAGATERLLEL-LSVQSPISSPATPRSLPPRRANGAALTLDLVTFHYPS 365 Query: 349 ATGVEQPFT--LGPLNLALKRGELLFIVGDNGSGKTTLIKLLLGLYRPQQGSILLDGKPV 406 +P T L L+++++ GE + IVG +G+GKT+L +LLL Y PQ+G I LDG + Sbjct: 366 -----RPLTPALSNLSVSIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIELDGIDI 420 Query: 407 TDEDRDDYRQLFTTVFADFHLF-----DELLPTAGEARSEQVAQAAA-----HYLQRLEI 456 + D R V D +F + + EA E+V AA +++RL Sbjct: 421 RELDLHALRNTIGIVPQDTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEFIERLPE 480 Query: 457 AHKVSIKDDAFTTLDLSTGQRKRLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTELLP 516 + + + + LS GQR+R+A+ A L+ P+L+ DE + D L L Sbjct: 481 GYLSFLGERG---VRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGAL-- 535 Query: 517 ELRELGHLVIAISHDDRYFHLADRVVRMAGGQIVE 551 E +G + I+H ADR++ M G+IVE Sbjct: 536 EAAMVGRTTLVIAHRLATVQRADRIIVMEHGKIVE 570 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 116/488 (23%), Positives = 207/488 (42%), Gaps = 37/488 (7%) Query: 82 MNRVGQDLVAQIRMRLAQKILSAPIDALERYRSYRLIPVLTQDVDMISDMIFVLATTLV- 140 M V L+ +R ++ +++L P+ + R+I + +V I +MI + T+++ Sbjct: 83 MTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINSMMFEVQQIIEMITKVYTSIIR 142 Query: 141 SVVTVLGCLAFLAWLS--LPLLGILVLALVLGGAIQVWAQVKGVAGFW-KARDHEEELHK 197 +TV+ L+FL WL+ L L+ +++L L+ AI V A + + + + E+ + Sbjct: 143 DSLTVIVLLSFLFWLNWRLTLVALVLLPLI---AIVVRATGRRLRRLTREYQTVNGEMTQ 199 Query: 198 AYRDISQGAKELRMQRGRRSRMFRRRIEHTIKAIRDVNSRAINIYV----LAAAYGSALY 253 + ++ + +++ G R R E +R R + S Sbjct: 200 VIEETTRANQVIKIFGGHRYE--EERFEVRADKLRGYTMRMATAMAATTPVTQVMASTAV 257 Query: 254 FLLIALILGWAAFHPVDMAVLSGFVLILLFLKGPVEQIMGVLPEVGRAKVAFQRIAELSA 313 ++I + L + + + F+ +L L P++ I V + R A AE Sbjct: 258 AIVIVIALIQSGQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPLQRGLTA----AEAVF 313 Query: 314 SFANPEPHLHLDGSAPPATLEEGIELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFI 373 + EP +G A ++ + + +P +Q L +NL+++ GE + Sbjct: 314 KLIDAEPE-RTNGKDLAARAAGRLDFVRLGFTYPG----QQTMALQDINLSVQPGETIAF 368 Query: 374 VGDNGSGKTTLIKLLLGLYRPQQGSILLDGKPVTDEDRDDYRQLFTTVFADFHLFDELLP 433 VG +G GK+TL+ L+ G Y G I LDG + + R+ V LFD+ + Sbjct: 369 VGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVVLFDDTIA 428 Query: 434 TA---GEARSEQV-AQAAAHYLQRLEI------AHKVSIKDDAFTTLDLSTGQRKRLALV 483 G+A ++ AAAH E+ + I D+ LS GQR+RLA+ Sbjct: 429 ANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGS---RLSGGQRQRLAIA 485 Query: 484 HAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHLADRVVR 543 A + P+L+ DE + D L EL + G + I+H ADR+ Sbjct: 486 RAIYKDAPILILDEATSALDSESERAVQAA-LDELMK-GRTTLVIAHRLSTIERADRIAV 543 Query: 544 MAGGQIVE 551 +A G IVE Sbjct: 544 LAEGHIVE 551 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 26/314 (8%) Query: 253 YFLLIALILGWAAFHPV-----DMAVLSGFVLILLFLKGPVEQIMGVLPEVGRAKVAFQR 307 Y+ +AL+L W V + L+ F+ + L+ P+ QI ++ RA + R Sbjct: 307 YYTSMALVL-WVGGQRVASGALTVGSLTEFLTFITILQQPLRQIGMIVNASARATGSGAR 365 Query: 308 IAELSASFANPEPHLHLDGSAPPATLEEGIELREVRYAFPSATGVEQPFTLGPLNLALKR 367 + E+ + +P + +A +++G+ LR +F G L ++ +++ Sbjct: 366 LFEV----LDTDPEIKDAENAHDLKIDKGL-LRFESVSFAYGHGPNDRTVLKDISFEVRK 420 Query: 368 GELLFIVGDNGSGKTTLIKLLLGLYRPQQGSILLDGKPVTDEDRDDYRQLFTTVFADFHL 427 GE+L IVG GSGK+TL L+ Y G I +DG+ + R + V + L Sbjct: 421 GEVLGIVGAPGSGKSTLAHLIPRFYEVSGGRITIDGQDLRALSLSSLRSAVSLVQQENFL 480 Query: 428 FDELL--------PTAGEARSEQVAQAAA--HYLQRLEIAHKVSIKDDAFTTLDLSTGQR 477 FD + P AGE R + A A ++++L + + + LS GQR Sbjct: 481 FDTSVHNNVAYPEPQAGEERVIEAASVAQIHEHVEQLPKGYTTRVGERGVA---LSGGQR 537 Query: 478 KRLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHL 537 +R+ + L+ +LV D+ A DP L L++ ++IA H Sbjct: 538 QRMTIARGLLDQPSILVLDDSTAAIDPATEQRVRAALQSSLKDTATIIIA--HRLSSLKH 595 Query: 538 ADRVVRMAGGQIVE 551 AD+++ + G+IVE Sbjct: 596 ADQIIVLDEGRIVE 609 >gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 621 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 114/475 (24%), Positives = 205/475 (43%), Gaps = 91/475 (19%) Query: 123 QDVDMI-SDMIFVLATTLVSVVTVLGCLAFLAWLSLPLLGILVLALVLGGAIQVWAQVKG 181 +DV MI D++ + V++V+V+G F W+ +P + WA + G Sbjct: 152 RDVCMIMGDILVFVLIYFVTLVSVVGT--FDLWMLVPFMS--------------WAALYG 195 Query: 182 VAGFW------KARDHEEE--------LHKAYRDISQGAKELRMQRGRRSRMFRRRIEHT 227 VA + K H+ + + AY +I G +L GR + R ++ Sbjct: 196 VALRYFVPRLSKVSRHQADARSLMTGRITDAYTNI--GTVKLFSHAGREAGYARNAMQEF 253 Query: 228 IKAIRD---------VNSRAINIYVLAAAYGSALYFLLIALILGWAAFHPVDMAVLSGFV 278 + A+ + V + A+++ ++ + G AL+ + V + ++ Sbjct: 254 LVAVHNQMRLVSGFEVVNHALSMLLILSTAGVALWLWTLG---------QVGIGAVAAAT 304 Query: 279 LILLFLKGPVEQIMGVLPEVGRAKVAFQRIAELSASFANPEPHLHLDGSAP---PATLEE 335 + L L G +M + + F+++ + N H+ AP P +++ Sbjct: 305 AMALRLNGISHWVMWEMASL------FEQVGTVQDGI-NTLSRRHMVVDAPDALPLQVDK 357 Query: 336 G-IELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFIVGDNGSGKTTLIKLLLGLYRP 394 G + V +A+ G +P + L+L ++ GE + +VG +G+GK+T++ LLL Y Sbjct: 358 GELVFESVGFAY----GGTRP-VIEQLDLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDI 412 Query: 395 QQGSILLDGKPVTDEDRDDYRQLFTTVFADFHLF-----DELLPTAGEARSEQVAQAAAH 449 +QG IL+DG+ + + R V D L D +L +A EQ+ AA Sbjct: 413 EQGRILIDGQDIAHVTQTSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASDEQMIAAA-- 470 Query: 450 YLQRLEIAHK--VSIKDDAFTT----------LDLSTGQRKRLALVHAYLEGRPVLVFDE 497 +R E AH+ +++ D T + LS GQR+R+A+ L+ P+L+ DE Sbjct: 471 --KRAE-AHEFILTLSDAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDE 527 Query: 498 WAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHLADRVVRMAGGQIVED 552 + D T L +L E G V+AI+H DR++ + G IVE+ Sbjct: 528 ATSALDSEAEAAIQTSLY-QLME-GKTVVAIAHRLSTIAAMDRLIVLDKGSIVEE 580 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 101/449 (22%), Positives = 192/449 (42%), Gaps = 57/449 (12%) Query: 125 VDMISDMIFVLATTLVSVVTVLGCLAFLAWLSLPLLGILVLALVLGGAIQVWAQVKGVAG 184 +D +D++ ++ T + ++++ LA + L LP + ++ + + K G Sbjct: 253 LDFFTDVLMIMMTAAI-LISINPWLALVTLLPLPFIAWMIHVV----------RDKLRNG 301 Query: 185 FWKARDHEEELHKAYRDISQGAKELRM--QRGRRSRMFRRRIEHTIKAIRDVNSRAINIY 242 F K ++ D G + ++ Q R + FR H + VN R ++ Sbjct: 302 FEKVDRIWSQVTNVLADTIPGIRVVKAFAQEKREAARFREANNHNLV----VNDRVNKVW 357 Query: 243 VLAAAYGSALYFLL-IALILGWA------AFHPVDMAVLSGFVLILLFLKGPVEQIMGVL 295 L + + FL I L++ WA + + + VL+ F+ + ++ + ++ Sbjct: 358 SL---FSPTVTFLTEIGLLVVWALGIWQVSQGMITVGVLTAFLAYISRFYTRLDSMSRIV 414 Query: 296 PEVGRAKVAFQRIAEL---SASFANPEPHLHLDGSAPPATLEEGIELREVRYAFPSATGV 352 +A +RI ++ +S +HLD ++ I ++++ + + + + Sbjct: 415 SVTQKAATGAKRIFDILDHVSSVPEATNPVHLD------KVQGKITIKDIGFRYGNRAVI 468 Query: 353 EQPFTLGPLNLALKRGELLFIVGDNGSGKTTLIKLLLGLYRPQQGSILLDGKPVTDEDRD 412 L+L + GE++ +VG +GSGK+TL+ L+ Y G+I++DG V Sbjct: 469 RG------LDLTINPGEMIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIP 522 Query: 413 DYRQLFTTVFADFHLF-----DELLPTAGEARSEQV-----AQAAAHYLQRLEIAHKVSI 462 +YR+ V + LF D + +A E + A A ++ RL + + Sbjct: 523 EYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREDIIAAARAAHAHEFILRLPHGYDSMV 582 Query: 463 KDDAFTTLDLSTGQRKRLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELG 522 + T LS G+R+R+++ A L +L+ DE + D T L +R G Sbjct: 583 GERGQT---LSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVR--G 637 Query: 523 HLVIAISHDDRYFHLADRVVRMAGGQIVE 551 IAI+H ADR+V M GQIVE Sbjct: 638 RTTIAIAHRLSTLRRADRIVVMDRGQIVE 666 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,152,942 Number of extensions: 44226 Number of successful extensions: 306 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 284 Number of HSP's successfully gapped: 36 Length of query: 567 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 479 Effective length of database: 895,685 Effective search space: 429033115 Effective search space used: 429033115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)