BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2228.p (366 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981212|ref|YP_001354277.1| Fe2+-dicitrate sensor, membrane... 103 1e-23 gi|152981298|ref|YP_001352904.1| Fe2+-dicitrate sensor, membrane... 101 6e-23 gi|152981041|ref|YP_001353716.1| Fe2+-dicitrate sensor, membrane... 100 1e-22 gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane... 96 3e-21 gi|152981305|ref|YP_001355174.1| Fe2+-dicitrate sensor, membrane... 94 2e-20 >gi|152981212|ref|YP_001354277.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 341 Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/334 (29%), Positives = 150/334 (44%), Gaps = 47/334 (14%) Query: 37 VRVEAARWHT-CREQGCSPQQEAQFQRWLSASTAHGAAYARIEAGLAGLNAATPALRRNA 95 VR AA W + + Q+QRW A H A+ +IEA L + L Sbjct: 25 VRKRAAEWLVELQADTVTDDTRKQWQRWRDAHPDHLRAWQKIEAFGEKLQTLSSPL---- 80 Query: 96 ASAAPATIQARGASGGSWWQRHMGARWRPRFNALALCCVMLLGCGLATLHWL--GQRSFH 153 A A + G++G R A+ +ML G WL Q + Sbjct: 81 ---AHAALTTPGSAG--------------RRQAIKTLAIMLFAGGTT---WLVEEQLPWR 120 Query: 154 QSFAVRQ---GERMELTLPDGTELALDSGTALEVTLLPQRREVHLTSGQAMFHVAHD--- 207 Q A R+ GER +TL DGT L L++ T++++ +R V L SG M AHD Sbjct: 121 QWSADRRTGVGERATITLADGTLLELNAETSVDIHYSDTQRIVRLLSGDIMITTAHDPRQ 180 Query: 208 ----SSRPFVVETGATRVTVLGTRFSVRRGNED---AVEVAVEQGHVMVTSTAPDHPAQA 260 +RPF+VET + LGT+FSV++ NE A +V+V +G V + P+ +A Sbjct: 181 ASGGKARPFLVETRQGSIRALGTQFSVQQRNEQRGGASKVSVFEGAVEIR---PNLKGEA 237 Query: 261 NLL-AGQTVQASASGLLGAVRDIDPASIAPWRRGLLHFTSTPLAQALQEFERYGPSHVFV 319 +L AGQ +A G A+ +D A + WR+G++ PL L+E Y P H+ Sbjct: 238 RILQAGQQTSFTADG-FSAIEAVDEA-VTAWRQGMIVAQDLPLRDFLKELGNYRPGHIDC 295 Query: 320 RDPVVAAMQVGGSYRLDSPQAFAQTMPRILPVRL 353 D +A + V G+Y L + LP+++ Sbjct: 296 DDK-IAQLPVTGTYPLKDTDKVLDMLQTTLPLQV 328 >gi|152981298|ref|YP_001352904.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 333 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 155/327 (47%), Gaps = 40/327 (12%) Query: 40 EAARWHTC-REQGCSPQQEAQFQRWLSASTAHGAAYARIEAGLAGLNAATPALRRNAA-S 97 +AA+W R S +Q+WLSA+ H A+AR+EA TP ++AA + Sbjct: 17 QAAKWFALLRSDSISDSDRISWQKWLSANAEHRRAWARVEAVSQQFETFTPEPEQSAAVN 76 Query: 98 AAPATIQARGASGGSWWQRHMGARWRPRFNALALCCVMLLGCGLATLHW-LGQ------- 149 A A +AR + R AL + ++ C + W +GQ Sbjct: 77 ALDAASRAR----------------KQRRRALKMLTLL---CTTGAVSWSVGQLEPVQRS 117 Query: 150 -RSFHQSFAVRQGERMELTLPDGTELALDSGTALEVTLLPQRREVHLTSGQAMFHVAHD- 207 +F ++ GE ++ L DG+++ L++ +AL R + L G+ + A D Sbjct: 118 WLAFSSDYSTAVGETRDVMLADGSQVWLNTASALNARYQADLRRLVLLGGEILIETAKDP 177 Query: 208 --SSRPFVVETGATRVTVLGTRFSVRRGNEDAVEVAVEQGHVMVTSTAPDHPAQANLLAG 265 +RPFVV+T R+ LGTRF+VR+ + +++V +G V +T A AQ + AG Sbjct: 178 AVPTRPFVVDTAQGRLRALGTRFTVRQ-LDGITQLSVYKGAVEITPVAASGSAQI-IDAG 235 Query: 266 QTVQASASGLLGAVRDIDPASIAPWRRGLLHFTSTPLAQALQEFERYGPSHVFVRDPVVA 325 Q V SA G + +DPA+ A W +G+L LA+ + E RY ++ P VA Sbjct: 236 QQVLFSADG-IEIPSAVDPANEA-WAKGVLFADDLTLAEFVVELSRYHKGYLACA-PEVA 292 Query: 326 AMQVGGSYRL-DSPQAFAQTMPRILPV 351 ++V G+Y L D Q FA + LPV Sbjct: 293 GLRVVGAYPLHDMQQTFAM-LETALPV 318 >gi|152981041|ref|YP_001353716.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 340 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 23/315 (7%) Query: 41 AARWHTCREQGCSPQQE-AQFQRWLSASTAHGAAYARIEAGLAGLNAATPALRRNAASAA 99 AA W+ G S E A+F+RW H AYAR+E A R + S+ Sbjct: 33 AAEWYAQLHSGDSGAAELAEFERWRQQDPGHAEAYARMEKLWA---------RFDTVSSK 83 Query: 100 PATIQARGASGGSWWQRHMGARWRPRFNA-LALCCVMLLGCGLATLHWLGQRSFHQSFAV 158 PA + A GA R + A + L C+ + A+ G+ + Sbjct: 84 PAVLALNKALKS-------GAGKRKKLTAQVLLLCIAVFAAWFASQSMFGKYMLA-DYRT 135 Query: 159 RQGERMELTLPDGTELALDSGTALEVTLLPQRREVHLTSGQAMFHVAHDSSRPFVVETGA 218 GE+ + L D + + L++ +A+++ ++R V L G+ M VA DS+RPF+VET Sbjct: 136 AIGEQRVIELSDQSRITLNTQSAIDIDFSGRQRRVTLQRGEIMIDVAKDSTRPFIVETAH 195 Query: 219 TRVTVLGTRFSVRRGNEDAVEVAVEQGHVMVTSTAPDHPAQANLLAGQTVQASASGLLGA 278 LGT++ V+R DA V V + V + A A L G+ + + Sbjct: 196 GTARALGTQYIVKR-EADATRVTVLESSVQ--ACAAKVEACVTLTPGEQTTITPDA-VQP 251 Query: 279 VRDIDPASIAPWRRGLLHFTSTPLAQALQEFERYGPSHVFVRDPVVAAMQVGGSYRLDSP 338 V ++ + A W + +L PLAQ L E RY + +A ++V G Y LD Sbjct: 252 VSVVNAQAAAAWSKHMLVVDDQPLAQVLTELARYRYGRIVFNADEIAGLRVSGVYALDDT 311 Query: 339 QAFAQTMPRILPVRL 353 + + P+R+ Sbjct: 312 DRTLEVLLATTPIRI 326 >gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 334 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 140/306 (45%), Gaps = 37/306 (12%) Query: 58 AQFQRWLSASTAHGAAYARIEAGLAGLNAATPALRRNAASAAPATIQ-ARGASGGSWWQR 116 A +Q+W +A H A+ IE L R N SA A A+ AS Sbjct: 35 AAWQKWRAADPEHERAWLHIEDVNQQLRG-----RMNGVSADTAIASIAQPAS------- 82 Query: 117 HMGARWRPRFNALALCCVMLLGCGLATLHWLGQ-----RSFHQSFAVRQGERMELTLPDG 171 R R AL V++ + T WL ++ GER+ L DG Sbjct: 83 ------RSRRKALKTFSVVVT---VGTAAWLSSETMLWKTLTSEIRTATGERLNFKLADG 133 Query: 172 TELALDSGTALEVTLLPQRREVHLTSGQAMFHVAHDS---SRPFVVETGATRVTVLGTRF 228 T+L L++ TA+ V R V L G+ + A DS +RPF+ ET A R+ LGT+F Sbjct: 134 TQLELNTDTAVNVRYDSALRLVQLVRGELLITTAKDSVSPARPFMAETVAGRILALGTKF 193 Query: 229 SVRRGNEDAVEVAVEQGHVMVTSTAPDHPAQ-ANLLAGQTVQASASGLLGAVRDIDPASI 287 +VR+ + D +VAV +G V + ++P Q L AGQ +A G L + I ++ Sbjct: 194 TVRQ-DGDISQVAVLEGAVELIPA--NNPGQVVRLDAGQAGSFNAEGALTPPQAI--SAQ 248 Query: 288 APWRRGLLHFTSTPLAQALQEFERYGPSHVFVRDPVVAAMQVGGSYRLDSPQAFAQTMPR 347 A W G+L + L + E +RY P H+ DP A +++ G + L+ Q ++ Sbjct: 249 AAWTEGVLIASDMRLDDFIAELKRYRPGHLSC-DPASAGLRLSGVFPLNDMQKILTSLTE 307 Query: 348 ILPVRL 353 +LPVR+ Sbjct: 308 VLPVRV 313 >gi|152981305|ref|YP_001355174.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 330 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 136/307 (44%), Gaps = 27/307 (8%) Query: 40 EAARWHTCREQGCSPQQEAQFQRWLSASTAHGAAYARIEAGLAGLNAATPALRRNAASAA 99 EAA W G + +RW +S H A+AR + L L A P+L + A Sbjct: 23 EAAEWLMQLSAGARAEDHRACERWSQSSPEHARAWARAQLLLNKLGALPPSLAMPTLNRA 82 Query: 100 PATIQARGASGGSWWQRHMGARWRPRFNALALCCVMLLGCGLATLHWLGQRSFHQSFAVR 159 P + + + A W G+ ++ + + + Sbjct: 83 PDAGRRAALTRLAAILALAPASW-----------------GIWSV--FQAQDWMADYCTA 123 Query: 160 QGERMELTLPDGTELALDSGTALEVTLLPQRREVHLTSGQAMFHVAHDSS---RPFVVET 216 GE+ + L D TEL L++ TA++V +R V L SG+ + AH+++ RPF V T Sbjct: 124 VGEQRVIHLADNTELTLNTATAVDVRFSSTQRNVRLRSGEILVQTAHEAAAVYRPFSVNT 183 Query: 217 GATRVTVLGTRFSVRRGNEDAVEVAVEQGHVMVTSTAPDHPAQANLLAGQTVQASASGLL 276 R+ LGTRFSVR + D +AV +G V +T AQ L AGQ V + ++ Sbjct: 184 IQGRMEALGTRFSVRM-DGDTTHLAVLEGAVRITPDRTGTGAQQVLRAGQQVSFT-DNVI 241 Query: 277 GAVRDIDPASIAPWRRGLLHFTSTPLAQALQEFERYGPSHVFVRDPVVAAMQVGGSYRL- 335 V D A IA W RG+L LA E RY V V DP VA ++V G+Y + Sbjct: 242 ADVAGADDAVIA-WARGMLVADKMRLADFAAELSRYRSGIVRV-DPAVAGVRVSGAYPVG 299 Query: 336 DSPQAFA 342 D+ +A A Sbjct: 300 DTDKALA 306 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.130 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 790,573 Number of extensions: 30932 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 16 Length of query: 366 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 281 Effective length of database: 906,776 Effective search space: 254804056 Effective search space used: 254804056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)