BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2226.p
         (1369 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas...    65   2e-11

>gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase
            [Janthinobacterium sp. Marseille]
          Length = 560

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 116/551 (21%), Positives = 213/551 (38%), Gaps = 63/551 (11%)

Query: 504  AELGPAAPVPVHQQFSRIAQEQPDAVAVLFGQQHLSYGELEQRANQLAHHLLAHGAGPET 563
            AE+ PA    + +      Q+  D  A +   + L+Y E++  + ++   L + G     
Sbjct: 15   AEIDPARYGSLVELLDESFQKYADRNACVCMDKALTYREVDHLSTEVGAWLQSIGLQKGA 74

Query: 564  RVGIAVERSLEMIVGLLAILKTGAAYVPLDMDYPAERLAYIAADSGF-ALLITHS----- 617
            RV + +   L+  + + A+L+ G   V ++  Y    L +   DSG  A++I  +     
Sbjct: 75   RVALMMPNVLQYPIAIAAVLRAGYVIVNVNPLYKPRELEHQLTDSGAEAIIILENFAATL 134

Query: 618  ---------------------------------RLRQRLVPDRGV-QVIELDRLQLQALP 643
                                             R  +++VP   + Q +    +  QA  
Sbjct: 135  EKVIASTQVKHVIVATMGDLFGGLKGGIVNFVVRHVKKMVPAYSLPQAVPFKEVLRQAAG 194

Query: 644  VTPPMVALHPDNLAYVIYTSGSTGQPKGAAIGH-GALAHCM---GWMQRRYALSAQDAVL 699
            +T    AL   +LA++ YT G+TG  KGA + H   +A+ +    W+        +D  L
Sbjct: 195  MTLQRPALGHQDLAFLQYTGGTTGTAKGAMLTHRNIIANVLQNEAWISPVLNTLPKDKQL 254

Query: 700  HKAPFGFDVSVWEIFWPLTAGTR------LVLAAPGEQKDPERITELIRRHGITTLNFVP 753
                F   + ++ IF   T G        + L  P  +  P  I EL++ + +  L  V 
Sbjct: 255  I---FVCALPLYHIFALTTCGMLGTHLGVMNLLIPNPRDIPGFIKELMK-YKVHFLPAVN 310

Query: 754  SMLQAFLSHDGIEQQTRLRYVICGGESMPA-ATQAEALRRLAGVSLQNLYGPTETTIHVS 812
            ++    L++    +       +C G  M       +  R + G ++   YG +ET+   +
Sbjct: 311  TLYNGLLNNPDFAKVDFSELKLCNGGGMAVQKVVNDKWREVTGCAICEGYGLSETS-PTA 369

Query: 813  QWSCRDDGRSLVPIGRPIFATSAQVLDGALNPVPLGVAGELYIGGALLGRGYLGRAALTA 872
              +          IG P+ +T  +++D   N VP G AGE+ I G  +  GY      TA
Sbjct: 370  TANPPTTNEFTGTIGLPVSSTELKIIDSDDNEVPHGSAGEIAIRGPQVMAGYWNNPVETA 429

Query: 873  ERFVADPGDPDGGRLYRTGDLVRWNGQGQLEYLGRIDHQVKIRGLRIELGEVEAQLLAQE 932
            +   AD         ++TGD+   + +G  + + R    + + G  +   E+E  + A  
Sbjct: 430  QSMTAD-------GFFKTGDIGIMDERGFTKIVDRKKDMILVSGFNVYPSEIEGVVAAHP 482

Query: 933  ALREAVVITQPAADGLRLVAYVSPRAGNMVTPTQIREQLGQRLPAYMVPDAVVVLPTLPL 992
             + E   I  P       V     R    +T  ++     ++   Y  P ++     LP 
Sbjct: 483  GVLECACIGVPDEHTGEAVKLFVVRRDPALTEAELMAYCREQFTGYKKPKSIEFRTELPK 542

Query: 993  NANGKVDRKAL 1003
            +  GK+ R+ L
Sbjct: 543  SNVGKILRREL 553


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 3,141,093
Number of extensions: 131629
Number of successful extensions: 412
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 1
Length of query: 1369
Length of database: 1,221,021
Length adjustment: 95
Effective length of query: 1274
Effective length of database: 869,806
Effective search space: 1108132844
Effective search space used: 1108132844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 136 (57.0 bits)