BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2214.p
         (388 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982146|ref|YP_001353334.1| hypothetical protein mma_1644 [...   286   2e-78

>gi|152982146|ref|YP_001353334.1| hypothetical protein mma_1644
           [Janthinobacterium sp. Marseille]
          Length = 357

 Score =  286 bits (731), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 13/349 (3%)

Query: 23  LLVLCLTGLPLIFLDEISEHWRGDPPAEELTAGTPLVNLDRLVLAATGQGGVFPNETVRW 82
           +L+LC+TGLPLIF  EI      +  A E+ A TP +++D+++  A  +    P++   +
Sbjct: 1   MLLLCITGLPLIFHHEIGHLLGTEIEAAEMPANTPRISMDKVMEIARAK---HPDKVGMF 57

Query: 83  LSIEEDSGQIW---LGLGPSYDAPRNQDHVVRFDARSGTLIHAARSGEHTSPLWVGLMFK 139
            S E D  ++W   L   P+ +    Q   V  DAR+G ++   + G      ++ +MF 
Sbjct: 58  ASQEADDDRVWYVTLATTPTSEVDMKQ---VAVDARTGEVLGQPQLGSG----FMYIMFS 110

Query: 140 LHTDWFAGLPGEMFLAVMGLLFVIATVSGVVLYAPYTKNQAFGTVRRSKAARLYWLDLHN 199
           LH + FAGL G +FL  MG+L ++A +SGVVLY P+ K   FGTVR  ++ RL WLDLHN
Sbjct: 111 LHVNLFAGLAGMLFLGFMGILLLVAIISGVVLYGPFMKKLEFGTVRAERSTRLKWLDLHN 170

Query: 200 LLGIVTFVWALLIGVTGIINQLSTPLYDIWRATAMQALLKPYQGHAMPHQLSSLQAAYDT 259
           LLGIVT  W L++G TG+IN  +  L   W+   M  ++ PY+G     +L SLQ A D 
Sbjct: 171 LLGIVTLAWLLVVGATGVINTWADLLVKYWQFDQMAEMVAPYKGKPPITELGSLQKAVDA 230

Query: 260 ALRATPGKSVRSIRFPDDQFGSPHHYLIWTKGDTALTSRLATPVLVDAQSGQLSATLPMP 319
           A+   P   +  I FP   F SPHHY I+ +G  ALTSRL  PVLVDA + +++ +  +P
Sbjct: 231 AIALEPDMKMGFIAFPGTSFTSPHHYGIFMRGTEALTSRLFKPVLVDATTSEVTDSRTLP 290

Query: 320 WYLTVLLSSRPLHFGDFGGIPLKIIWALLDLVTIAVLVSGLVLWILRRK 368
           WYLT LL S+PLHFGD+GG P++I+WA+LDL++I VL SGL LWI+RRK
Sbjct: 291 WYLTGLLVSQPLHFGDYGGRPMQIMWAILDLISIVVLGSGLYLWIVRRK 339


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,031,888
Number of extensions: 45326
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 303
Effective length of database: 906,776
Effective search space: 274753128
Effective search space used: 274753128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)