BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2206.p (2314 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983071|ref|YP_001352710.1| 3-oxoacyl-acyl carrier protein ... 101 7e-22 gi|152979820|ref|YP_001353050.1| 3-oxoacyl-[acyl-carrier-protein... 99 4e-21 gi|152983044|ref|YP_001352609.1| 3-oxoacyl-(acyl-carrier-protein... 89 3e-18 >gi|152983071|ref|YP_001352710.1| 3-oxoacyl-acyl carrier protein synthase II [Janthinobacterium sp. Marseille] Length = 437 Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 114/424 (26%), Positives = 174/424 (41%), Gaps = 46/424 (10%) Query: 38 WRKLADGENMVRRLDAAALAAAGVATGMAQHPAHVPVAAVIPQADHFDWGFFGYSRQEAE 97 W +L G + +RRLD A V V+P G F R + Sbjct: 38 WSRLLSGSSGLRRLDENMTAGI-----------DAKVGGVVPSIAEDQNGGFDPDRHVSS 86 Query: 98 TIDPQQRLFLMCAW----EALEMAGYPPEALGRNNRIAVLGACKMSTYPA-GRFEQVQEV 152 + F++ A EAL A + P + R A + A + +PA +V + Sbjct: 87 KDQRKMDKFIVYAIAASEEALREAAWQPTTERQKERTATIIASGIGGFPAIANAVRVTDT 146 Query: 153 S-----SPLTFQRLIGNDKDYLATRVSYKLNLTGPSLTVQTACSSSLVAVHMACEQLVSG 207 SP T + N A VS K GP TAC++S+ A+ A + +G Sbjct: 147 KGPNRLSPFTIPSFLIN---LAAGHVSIKYGFKGPIAAPVTACAASVQAIGDAARMIRNG 203 Query: 208 ECDMALAGGVGLSFPQES--GYLHRDGMIFSAQGQ----CRPFDAQADGVTIGNGAGVVL 261 E D+AL GG + + S G+ + + + RPFD DG +G GAG+++ Sbjct: 204 EADVALCGGAEAAIDRVSLGGFSAARALSTNFNDEPCAASRPFDQARDGFVMGEGAGILV 263 Query: 262 LKPLQRALADGDPILAVIRGSAINNDGQRKAGFTAPSVEGQQAVITEALSL--AAVSPAD 319 L+ L ALA G +A + G D TA +G A A++L A ++ AD Sbjct: 264 LEDLDHALARGAKPIAELIGYGTTADAYH---ITAGPTDGSGAARAMAIALEQAGITAAD 320 Query: 320 IGLVEAHGTGTPLGDPIEVRALTQAWRPHTSAAQYCALGSVKSNLGHLDTAAGIASLLKA 379 + + AH T TP+GD E+ A+ + S A+ S KS GHL AAG + A Sbjct: 321 VQHLNAHATSTPVGDAGELAAIKAVFGTSNS----IAVTSTKSATGHLLGAAGGVEAIFA 376 Query: 380 ALAVHHAHIPPSLGVETPNPAIDWQDSPFYVPPVLLPWPDSQTPRRAGVSSFAIGGTNCH 439 LA+ +P +L +ET + D ++ + A + F GG N Sbjct: 377 ILALRDQIVPATLNLETKDIDATGVD-------IVNGIARNMDIEHAMSNGFGFGGVNAS 429 Query: 440 VVLE 443 V+ + Sbjct: 430 VLFK 433 >gi|152979820|ref|YP_001353050.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Janthinobacterium sp. Marseille] Length = 413 Score = 98.6 bits (244), Expect = 4e-21, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 17/244 (6%) Query: 167 DYLATRVSYKLNLTGPSLTVQTACSSSLVAVHMACEQLVSGECDMALAGG-------VGL 219 + ++ +S L GP+L + TAC++ L ++ A + G+ D+ +AGG +GL Sbjct: 144 NMISGHLSIIYGLKGPNLAIVTACTTGLHSIGAAGRMIEYGDADVMIAGGAESTISPLGL 203 Query: 220 S-FPQESGYLHRDGMIFSAQGQCRPFDAQADGVTIGNGAGVVLLKPLQRALADGDPILAV 278 F R+ +A RP+D DG +G GAGV++L+ + A A G I A Sbjct: 204 GGFASARALSSRNDDPATAS---RPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAE 260 Query: 279 IRGSAINNDGQRKAGFTAPSVEGQQAVITEALSLAAVSPADIGLVEAHGTGTPLGDPIEV 338 + G ++ D TAP+++G + +T AL A ++ + + AHGT TPLGD E Sbjct: 261 LVGFGMSGDAYH---ITAPNMDGPRRSMTNALKSAEIAADQVQYLNAHGTSTPLGDKNET 317 Query: 339 RALTQAWRPHTSAAQYCALGSVKSNLGHLDTAAGIASLLKAALAVHHAHIPPSLGVETPN 398 A+ A+ H A+ + S KS GHL AG + LA+HH PP++ + + Sbjct: 318 DAVKAAFGAH---AKKLTVNSTKSMTGHLLGGAGGLESVFTVLALHHQISPPTINIFNQD 374 Query: 399 PAID 402 P D Sbjct: 375 PECD 378 >gi|152983044|ref|YP_001352609.1| 3-oxoacyl-(acyl-carrier-protein) synthase II [Janthinobacterium sp. Marseille] Length = 438 Score = 89.0 bits (219), Expect = 3e-18, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 160/394 (40%), Gaps = 35/394 (8%) Query: 19 IAIVGAGCRMADADDLFSFWRKLADGENMVRRLDAAALAAAGVATGMAQHPAHVPVAAVI 78 I + G G + + W +L G++ +RRL+ V G+ V V+ Sbjct: 19 IVVTGMGIVSPLGSGVETVWSRLLAGQSGIRRLE------EDVTDGI-----EAKVGGVV 67 Query: 79 PQADHFDWGFFG----YSRQEAETIDPQQRLFLMCAWEALEMAGYPPEALGRNNRIAVLG 134 P + G F S ++ +D L+ + EAL A + P R A + Sbjct: 68 PTSLEDPAGGFDPDQHVSSKDQRKMDKFIMYALVASEEALRQADWHPTTEAEKERTATVV 127 Query: 135 ACKMSTYPA-GRFEQVQEVS-----SPLTFQRLIGNDKDYLATRVSYKLNLTGPSLTVQT 188 A + +PA +V + SP T + N A +S K GP T Sbjct: 128 ASGIGGFPAIANAVRVTDKKGPNRLSPFTIPSFLIN---LAAGHISIKHGFKGPIAAPVT 184 Query: 189 ACSSSLVAVHMACEQLVSGECDMALAGGVGLSFPQES--GYLHRDGMIFSAQGQ----CR 242 AC++S+ A+ A + + E D+ L GG + + S G+ + + R Sbjct: 185 ACAASVQAIGDAARMIRNEEADVVLCGGAEAAIDRVSLGGFAAARALSTNFNDDPTTASR 244 Query: 243 PFDAQADGVTIGNGAGVVLLKPLQRALADGDPILAVIRGSAINNDGQRKAGFTAPSVEGQ 302 PFD + DG +G GAG+++L+ L ALA G +A + G D G Sbjct: 245 PFDDERDGFVMGEGAGILILEELSHALARGAKPIAELIGYGTTADAYHMTA-GPADGGGA 303 Query: 303 QAVITEALSLAAVSPADIGLVEAHGTGTPLGDPIEVRALTQAWRPHTSAAQYCALGSVKS 362 ++ AL A + D+ + AH T TP+GD E+ A+ + A+ S KS Sbjct: 304 ARAMSIALQQAGIIATDVQHLNAHATSTPVGDAGELAAIKAVF----GTDNRIAVTSTKS 359 Query: 363 NLGHLDTAAGIASLLKAALAVHHAHIPPSLGVET 396 GHL AAG + LA+ +P +L ++T Sbjct: 360 ATGHLLGAAGGVEAIFTILALRDQVVPATLNLKT 393 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 4,927,401 Number of extensions: 189926 Number of successful extensions: 607 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 598 Number of HSP's successfully gapped: 3 Length of query: 2314 Length of database: 1,221,021 Length adjustment: 99 Effective length of query: 2215 Effective length of database: 855,018 Effective search space: 1893864870 Effective search space used: 1893864870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 138 (57.8 bits)