BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2200.p (614 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 241 8e-65 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 227 2e-60 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 221 1e-58 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 209 6e-55 gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPa... 206 3e-54 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 241 bits (615), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 167/526 (31%), Positives = 275/526 (52%), Gaps = 21/526 (3%) Query: 84 IALVG-WLIGGTLAGRLCFLASQVSSHLMAADIQTELRGQLLSRLVNVPLGFFQDHSSQK 142 +A+VG +++ G ++ + VSS L+ T LR Q+ R+++VPLGF+ HS + Sbjct: 63 VAIVGIFVLRGISTFTTTYMMTWVSSRLL-----TTLRKQMFERMLDVPLGFYATHSVGR 117 Query: 143 IRQVVIDDVEQLEDGLAHLIPELTSHFIAPLIVIAALFAVDWRLSLASLSSLVLGMVACM 202 + ++ +V+Q+ + + + + + +++++ LF ++WRL+L +L L L + Sbjct: 118 VINSMMFEVQQIIEMITKVYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVR 177 Query: 203 LLMRKRHDIAQDFYLNQGKLFKAMTEILRTMPAARLFNSGAAMQARVEEANGDYVGTAHR 262 R+ + +++ G++ + + E R ++F + R E G R Sbjct: 178 ATGRRLRRLTREYQTVNGEMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMR 237 Query: 263 WVRGALLPNLVMQVLVSSPLLLLLPLGLWWHQQGSLDLATLCFFVFFTPGLGNLLTKLAG 322 V QV+ S+ + +++ + L Q + T+ FV F + LLT L Sbjct: 238 MATAMAATTPVTQVMASTAVAIVIVIALI---QSGQNQTTVGGFVSFITAMLMLLTPLKN 294 Query: 323 FS--NRFVQQ-----QQAFEHLDILLGAPEQSEGSHTSLPEKITIRCEQVSFSY--HQQA 373 + N +Q+ + F+ +D PE++ G + + ++ F+Y Q Sbjct: 295 IAEVNGPLQRGLTAAEAVFKLID---AEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTM 351 Query: 374 VLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRHWDVTSGRILLGERPINDYTRETLRQ 433 L +++L++ PG T A VG SG GKSTLV L+ + T+G I L I + + +LR+ Sbjct: 352 ALQDINLSVQPGETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRK 411 Query: 434 NITCIFQENQLFDMSIADNIRLGKPTATEEEVIQAARAAQAHEFIMALPQGYQTLLAPGS 493 I + Q LFD +IA NI G ++ AA AA E I LP+G +T++ Sbjct: 412 QIAMVSQHVVLFDDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNG 471 Query: 494 ALLSGGEQQRLAIARAILKNAPILLLDEATSQADALNEHRIQLALSALAADKTVLVIAHR 553 + LSGG++QRLAIARAI K+APIL+LDEATS D+ +E +Q AL L +T LVIAHR Sbjct: 472 SRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHR 531 Query: 554 LSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRYASLWQMQHAHAV 599 LS+I AD+I VL +G +VE G H LL + G YA+L+ +Q A V Sbjct: 532 LSTIERADRIAVLAEGHIVELGSHQELLARNGVYANLYHLQFAKDV 577 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 227 bits (578), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 167/501 (33%), Positives = 268/501 (53%), Gaps = 21/501 (4%) Query: 110 LMAADIQTELRGQLLSRLVNVPLGFFQDHSSQKIRQVVIDDVEQLEDGLAHLIPELTSHF 169 L++ I +LR L+ + L +F + + + + +++ L+ + + + Sbjct: 200 LVSERIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDV 259 Query: 170 IAPLIVIAALFAVDWRLSLASLSSLVLGMVACMLLMRKRHDIAQDFYLNQGKLFKAMTEI 229 + ++ A L +++ L+L +L L L +A M+ + + D ++ + +++ +T + Sbjct: 260 LMIMMTAAILISINPWLALVTL--LPLPFIAWMIHVVR--DKLRNGFEKVDRIWSQVTNV 315 Query: 230 L-RTMPAARLFNSGAAMQ---ARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPLLLL 285 L T+P R+ + A + AR EAN + R + L + + L LL++ Sbjct: 316 LADTIPGIRVVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTEIGLLVV 375 Query: 286 LPLGLWWHQQGSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQA-------FEHLD 338 LG+W QG + + L F+ + + T+L S Q+A F+ LD Sbjct: 376 WALGIWQVSQGMITVGVLTAFLAY---ISRFYTRLDSMSRIVSVTQKAATGAKRIFDILD 432 Query: 339 ILLGAPEQSEGSH-TSLPEKITIRCEQVSFSYHQQAVLDNLSLTLHPGTTTALVGGSGSG 397 + PE + H + KITI+ + F Y +AV+ L LT++PG LVG SGSG Sbjct: 433 HVSSVPEATNPVHLDKVQGKITIK--DIGFRYGNRAVIRGLDLTINPGEMIGLVGHSGSG 490 Query: 398 KSTLVKLLLRHWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGK 457 KSTLV L+ R +DV++G I++ + R+NI + QE LF +IADNI GK Sbjct: 491 KSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGK 550 Query: 458 PTATEEEVIQAARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPIL 517 P A+ E++I AARAA AHEFI+ LP GY +++ LSGGE+QR++IARA+L + IL Sbjct: 551 PDASREDIIAAARAAHAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHIL 610 Query: 518 LLDEATSQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQH 577 +LDEATS D E IQ AL L +T + IAHRLS++ AD+IVV+++G++VE G H Sbjct: 611 ILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSH 670 Query: 578 AALLLQQGRYASLWQMQHAHA 598 LL ++G Y L+Q Q A Sbjct: 671 DELLQREGAYYKLYQAQQRQA 691 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 116/254 (45%), Positives = 165/254 (64%), Gaps = 4/254 (1%) Query: 360 IRCEQVSFSYH-QQAVLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRHWDVTSGRILL 418 +R V FSY + +L ++ T+ GTTTA+VG SGSGKSTL +LL R +DV G IL+ Sbjct: 360 VRFSHVDFSYEANRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAILI 419 Query: 419 GERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQAARAAQAHEFI 478 + + D T+ +LRQ I + Q+ LF+ +IA NI GKP A+ +++ AA++A HEFI Sbjct: 420 DGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEFI 479 Query: 479 MALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEATSQADALNEHRIQLAL 538 +LP GY T++ LSGGE+QR+AIAR +LK+ IL+ DEATS D+ +E IQ L Sbjct: 480 ESLPDGYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQL 539 Query: 539 SALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRYASLWQMQHAHA 598 +A ++T L+IAHRLS+IA A QI+VL++GR++E+G H LL +G YA +W Q A Sbjct: 540 KEIAQNRTTLIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLASEGAYAQMWMRQQAR- 598 Query: 599 VTPAQPTSEPSSPA 612 P + P+ A Sbjct: 599 --PDDALASPTDGA 610 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 209 bits (531), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 122/324 (37%), Positives = 186/324 (57%), Gaps = 11/324 (3%) Query: 286 LPLGLWWHQQ----GSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQAFEHL-DIL 340 + L LW Q G+L + +L F+ F L L ++ N + + L ++L Sbjct: 311 MALVLWVGGQRVASGALTVGSLTEFLTFITILQQPLRQIGMIVNASARATGSGARLFEVL 370 Query: 341 LGAPE--QSEGSHTSLPEKITIRCEQVSFSY----HQQAVLDNLSLTLHPGTTTALVGGS 394 PE +E +H +K +R E VSF+Y + + VL ++S + G +VG Sbjct: 371 DTDPEIKDAENAHDLKIDKGLLRFESVSFAYGHGPNDRTVLKDISFEVRKGEVLGIVGAP 430 Query: 395 GSGKSTLVKLLLRHWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIR 454 GSGKSTL L+ R ++V+ GRI + + + + +LR ++ + QEN LFD S+ +N+ Sbjct: 431 GSGKSTLAHLIPRFYEVSGGRITIDGQDLRALSLSSLRSAVSLVQQENFLFDTSVHNNVA 490 Query: 455 LGKPTATEEEVIQAARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNA 514 +P A EE VI+AA AQ HE + LP+GY T + LSGG++QR+ IAR +L Sbjct: 491 YPEPQAGEERVIEAASVAQIHEHVEQLPKGYTTRVGERGVALSGGQRQRMTIARGLLDQP 550 Query: 515 PILLLDEATSQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQ 574 IL+LD++T+ D E R++ AL + D ++IAHRLSS+ HADQI+VL++GR+VE+ Sbjct: 551 SILVLDDSTAAIDPATEQRVRAALQSSLKDTATIIIAHRLSSLKHADQIIVLDEGRIVER 610 Query: 575 GQHAALLLQQGRYASLWQMQHAHA 598 G HA L+ GRYA LW +Q+ A Sbjct: 611 GTHAELIAAGGRYAELWSLQNRGA 634 >gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 621 Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 187/612 (30%), Positives = 294/612 (48%), Gaps = 57/612 (9%) Query: 11 AAPPEAASASAARAAPAPGAVSRLLALTRTRPGPLLIATLAGIAAAILSLTPNLVAYHFS 70 A PP +A A GA + A+T LL A + A + ++ +V + Sbjct: 18 ATPPSGFTAFVW--ACTKGARRYIAAMT------LLTAAIGVFEALLFAMMGRIVDW--- 66 Query: 71 LALLHASL--DQER--LIALVGWLIGGTLAGRLCFLASQVSSHLMAADIQTELRGQLLSR 126 L+ + +L QER L+ L G L+ L+ L L + +A + +LR Sbjct: 67 LSKVQPALLWTQERSSLLTLAGILV---LSVILVALQTMFKHQALAGNFPMQLRWNFHRL 123 Query: 127 LVNVPLGFFQDHSSQKIRQVVIDDVEQLEDGLAHLIPELTSHFIAPLIVIAALFAVD-WR 185 ++N +GF+QD + ++ V+ + D + L I + +++ + D W Sbjct: 124 MLNQSMGFYQDEFAGRVAAKVMQTALAVRDVCMIMGDILVFVLIYFVTLVSVVGTFDLWM 183 Query: 186 L----SLASLSSLVLGMVACMLLMRKRHDIAQDFYLNQGKLFKAMTEILRTMPAARLFNS 241 L S A+L + L L RH A L G++ A T I +LF+ Sbjct: 184 LVPFMSWAALYGVALRYFVPRLSKVSRHQ-ADARSLMTGRITDAYTNI----GTVKLFSH 238 Query: 242 GAAMQARVEEANGDYVGTAH---RWVRGALLPNLVMQVLVSSPLLLLLPLGLWWHQQGSL 298 A +++ H R V G + N + +L+ +L + LW G + Sbjct: 239 AGREAGYARNAMQEFLVAVHNQMRLVSGFEVVNHALSMLL---ILSTAGVALWLWTLGQV 295 Query: 299 DLATLCFFVFFTPGLGNL----LTKLAGFSNRFVQQQQAFEHLD---ILLGAPEQSEGSH 351 + + L + + ++A + Q L +++ AP+ Sbjct: 296 GIGAVAAATAMALRLNGISHWVMWEMASLFEQVGTVQDGINTLSRRHMVVDAPD------ 349 Query: 352 TSLP---EKITIRCEQVSFSYH-QQAVLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLR 407 +LP +K + E V F+Y + V++ L LT+ PG LVG SG+GKST+V LLLR Sbjct: 350 -ALPLQVDKGELVFESVGFAYGGTRPVIEQLDLTIRPGEKVGLVGRSGAGKSTIVNLLLR 408 Query: 408 HWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQ 467 +D+ GRIL+ + I T+ +LR + + Q+ L S+ DNI G+P A++E++I Sbjct: 409 FYDIEQGRILIDGQDIAHVTQTSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASDEQMIA 468 Query: 468 AARAAQAHEFIMALPQ-----GYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEA 522 AA+ A+AHEFI+ L GY + LSGG++QR+AIAR +LK+APILLLDEA Sbjct: 469 AAKRAEAHEFILTLSDAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEA 528 Query: 523 TSQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLL 582 TS D+ E IQ +L L KTV+ IAHRLS+IA D+++VL++G +VE+G H LL Sbjct: 529 TSALDSEAEAAIQTSLYQLMEGKTVVAIAHRLSTIAAMDRLIVLDKGSIVEEGTHRELLE 588 Query: 583 QQGRYASLWQMQ 594 + G YA LW Q Sbjct: 589 RHGLYARLWAHQ 600 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,169,090 Number of extensions: 41925 Number of successful extensions: 339 Number of sequences better than 1.0e-08: 52 Number of HSP's gapped: 298 Number of HSP's successfully gapped: 54 Length of query: 614 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 525 Effective length of database: 891,988 Effective search space: 468293700 Effective search space used: 468293700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)