BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2199.p (589 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 219 5e-58 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 214 9e-57 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 209 3e-55 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 208 8e-55 gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport sy... 207 1e-54 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 219 bits (557), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 201/358 (56%), Gaps = 26/358 (7%) Query: 234 QHNQQLRQFYQRTSWKLAPGLLLANSLFGLVMAAALSFAGWRYLDGHLDGA--------- 284 ++++ L++ Y+ + K L L N+ ++A A++ WR G + G Sbjct: 245 RYDEGLKR-YETAAVKSQTSLSLLNTGQSSIIAIAVTLILWRATQGVISGTMTLGDLVLV 303 Query: 285 -----QLLIVLALLSTLSQPIESLLA--QRFQALASKEAMAAHAALLAHTALPDGHAEVA 337 QL I L L + + I+ LA +R +L + A PD A V Sbjct: 304 NAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQNREIADK--------PDTQALVT 355 Query: 338 AGEAQIRLEQVSFGYRPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSS 397 G A++R V F Y +L ++D AG TT +VG SG+GKSTL +LL RF+D + Sbjct: 356 DG-AEVRFSHVDFSYEANRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQ 414 Query: 398 GRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQ 457 G IL+DGQD+R V I +V QD +LF D+IA NIA G A+ + AA ++A Sbjct: 415 GAILIDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAY 474 Query: 458 CEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAENDHA 517 F++++PDG +T + E G LSGG+KQR+ IAR LLK I++FDE TSALD++++ A Sbjct: 475 IHEFIESLPDGYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQA 534 Query: 518 IRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQLW 575 I+ L+E+ RTT+++AHRL A Q++V+D+G++I+ G+H +LL Y Q+W Sbjct: 535 IQAQLKEIAQNRTTLIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLASEGAYAQMW 592 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 214 bits (546), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 175/528 (33%), Positives = 270/528 (51%), Gaps = 33/528 (6%) Query: 66 YWTVLLACACPLLRLLMTSSAQTALFMEGYRVTGQLRSSLVAHAMKVPLGLLARAFPSER 125 Y+ L AC L + T++ + G RVT +R+++ +H + E Sbjct: 74 YFIALFGVACVLA--IATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEV 131 Query: 126 LSRFIVHDLRWVEEFSSFGIAQQISNALLLTALIGALGWLDLTLALLVVVLLAVAVLVLE 185 LSR I D ++ I+ + NALL + L + + L+ +++V LA VL + Sbjct: 132 LSR-ITTDTTLIQTLIGTSISMALRNALLFAGGLVMLFFTSIKLSSIILVTLAFVVLPIV 190 Query: 186 QIGRRMLASARQQQAQLEQVSRHLGELSAGLPVLRAYQDDARIKQRFTQHNQQLRQFYQR 245 GRR+ +R Q ++ S GE+ +P ++AY + +RF Q + Sbjct: 191 WFGRRVRTLSRDSQDRVADASALAGEILNAMPTVQAYTHEKIEAKRFGQTVEN------- 243 Query: 246 TSWKLAPGLLLANSLFGLV----MAAALSFAGW----RYLDGHLDGAQL-------LIVL 290 ++K A + A SL ++ + A+ F W +DG + G QL IV Sbjct: 244 -AFKTAMRRIRARSLLTMIAILLVFGAIVFVLWLGAHAVIDGSMSGGQLGQFILYSAIVA 302 Query: 291 ALLSTLSQPIESLLAQRFQALASK--EAMAAHAALLAHTALPDGHAEVAAGEAQIRLEQV 348 + LS+ + AQR + E ++ + + + A P A A + L+ V Sbjct: 303 GAIGALSEVLGD--AQRAAGATERLLELLSVQSPI-SSPATPRSLPPRRANGAALTLDLV 359 Query: 349 SFGY--RPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSSGRILVDGQD 406 +F Y RP P L NL + AG+T IVGPSGAGK++L QLL RF+D G I +DG D Sbjct: 360 TFHYPSRPLTPALSNLSVSIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIELDGID 419 Query: 407 IRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQCEAFVDAMP 466 IR + L I +V QD ++F + NI G AT E++ AA R A F++ +P Sbjct: 420 IRELDLHALRNTIGIVPQDTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEFIERLP 479 Query: 467 DGADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAENDHAIRCALRELL 526 +G + L E G LSGGQ+QR+ IARALLK+ P++L DE TSALDAE++ ++ AL + Sbjct: 480 EGYLSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAM 539 Query: 527 PGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQL 574 GRTT+++AHRL AD+++VM+ GK+++ G+HA L+ LY L Sbjct: 540 VGRTTLVIAHRLATVQRADRIIVMEHGKIVETGTHASLVAAGGLYASL 587 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 209 bits (532), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 165/560 (29%), Positives = 292/560 (52%), Gaps = 19/560 (3%) Query: 28 YLRALCIMMLDGLLSAIPY-LCAAILLGSLLRGAQAAPPYWTVLLACACPLLRLLMTSSA 86 Y + L + +L +++A+ + A++ L +G P + L+ A + +L S Sbjct: 17 YKKRLAVALLGMIMTALTEPMFPAVMRVLLDKGFGGKPSFSLWLVPVAIVGIFVLRGIST 76 Query: 87 QTALFMEGY---RVTGQLRSSLVAHAMKVPLGLLARAFPSERLSRFIVHDLRWVEEFSSF 143 T +M + R+ LR + + VPLG A R+ ++ +++ + E + Sbjct: 77 FTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYA-THSVGRVINSMMFEVQQIIEMITK 135 Query: 144 GIAQQISNALLLTALIGALGWLDLTLALLVVVLLAVAVLVLEQIGRRMLASARQQQAQLE 203 I ++L + L+ L WL+ L L+ +VLL + +V+ GRR+ R+ Q Sbjct: 136 VYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVRATGRRLRRLTREYQTVNG 195 Query: 204 QVSRHLGELSAGLPVLRAYQDDARIKQRFTQHNQQLRQFYQRTSWKLAPGL----LLANS 259 ++++ + E + V++ + ++RF +LR + R + +A ++A++ Sbjct: 196 EMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATAMAATTPVTQVMAST 255 Query: 260 LFGLVMAAALSFAGWRYLDGHLDGAQLLIVLALLSTLSQPIESLLAQRFQALASKEAMAA 319 +V+ AL +G + G + + A+L L+ P++++ + AA Sbjct: 256 AVAIVIVIALIQSGQ---NQTTVGGFVSFITAMLMLLT-PLKNI--AEVNGPLQRGLTAA 309 Query: 320 HAALLAHTALPD-GHAEVAAGEAQIRLEQVSFGYR-PGEPV--LHNLDLDFPAGKTTVIV 375 A A P+ + + A A RL+ V G+ PG+ L +++L G+T V Sbjct: 310 EAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDINLSVQPGETIAFV 369 Query: 376 GPSGAGKSTLLQLLARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIAS 435 G SG GKSTL+ L+ F+ ++G I +DG I ++L +I+MV Q +LF D+IA+ Sbjct: 370 GMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVVLFDDTIAA 429 Query: 436 NIAAGARHATPEQLRAALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALL 495 NIA G + ++ AA AA + + +P+G +T + + G LSGGQ+QRL IARA+ Sbjct: 430 NIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSGGQRQRLAIARAIY 489 Query: 496 KDAPIVLFDEMTSALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKV 555 KDAPI++ DE TSALD+E++ A++ AL EL+ GRTT+++AHRL AD++ V+ +G + Sbjct: 490 KDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLSTIERADRIAVLAEGHI 549 Query: 556 IDCGSHAELLRRCTLYQQLW 575 ++ GSH ELL R +Y L+ Sbjct: 550 VELGSHQELLARNGVYANLY 569 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 208 bits (529), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 150/488 (30%), Positives = 254/488 (52%), Gaps = 11/488 (2%) Query: 96 RVTGQLRSSLVAHAMKVPLGLLARAFPSERLSRFIVHDLRWVEEFSSFGIAQQISNALLL 155 R+ LR++ H +++ L + ++R I + + F S + ++ L++ Sbjct: 204 RIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTR-IGSETDRICVFLSLHLLDFFTDVLMI 262 Query: 156 TALIGALGWLDLTLALLVVVLLAVAVLVLEQIGRRMLASARQQQAQLEQVSRHLGELSAG 215 L ++ LAL+ ++ L ++ + ++ + QV+ L + G Sbjct: 263 MMTAAILISINPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKVDRIWSQVTNVLADTIPG 322 Query: 216 LPVLRAYQDDARIKQRFTQHNQQLRQFYQRTS--WKLAPGLLLANSLFGLVMAAALSFAG 273 + V++A+ + R RF + N R + W L + + GL++ AL Sbjct: 323 IRVVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTEIGLLVVWALGI-- 380 Query: 274 WRYLDGHLDGAQLLIVLALLSTLSQPIESLLAQRFQALASKEAMAAHAA--LLAH-TALP 330 W+ G + L LA +S ++S+ R ++ K A A +L H +++P Sbjct: 381 WQVSQGMITVGVLTAFLAYISRFYTRLDSM--SRIVSVTQKAATGAKRIFDILDHVSSVP 438 Query: 331 DGHAEVAAGEAQIRLEQVSFGYRPGE-PVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLL 389 + V + Q ++ G+R G V+ LDL G+ +VG SG+GKSTL+ L+ Sbjct: 439 EATNPVHLDKVQGKITIKDIGFRYGNRAVIRGLDLTINPGEMIGLVGHSGSGKSTLVNLI 498 Query: 390 ARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQL 449 RF+D S+G I+VDG D+R++ + ++ I +V Q+ LF +IA NIA G A+ E + Sbjct: 499 CRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREDI 558 Query: 450 RAALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSA 509 AA RAA F+ +P G D+ + E G+ LSGG++QR++IARALL D I++ DE TS+ Sbjct: 559 IAAARAAHAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSS 618 Query: 510 LDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCT 569 +D + I+ AL L+ GRTTI +AHRL AD++VVMD+G++++ GSH ELL+R Sbjct: 619 VDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLQREG 678 Query: 570 LYQQLWSA 577 Y +L+ A Sbjct: 679 AYYKLYQA 686 >gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 612 Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 155/501 (30%), Positives = 254/501 (50%), Gaps = 29/501 (5%) Query: 96 RVTGQLRSSLVAHAMKVPLGLLARAFPSERLSRFIVHDLRWVEEFSSFGIAQQISNALLL 155 RV LR ++ H V L +L + +SR + D+ ++EF ++ + + LL Sbjct: 111 RVIFDLRRAMFNHLQHVSLSILDQTQVGRLMSR-LQGDVNSLQEFMETSVSA-VGDFFLL 168 Query: 156 TALIGALGWLDLTLALLVVVLLAVAVLVLE---QIGRRMLASARQQQAQLEQVSRHLGEL 212 ++ L +D+ L LL + +L + LV + R+ AR+ + + L Sbjct: 169 LGIVAVLLLMDVKLGLLTLCVLPMMFLVRKIWLPWARKAFTRAREASSSVN------AAL 222 Query: 213 SAGLPVLRAYQDDARIKQRFTQH------NQQLRQFYQRTSWKLAPGLLLANSLFGLVMA 266 + + +R Q++ R F ++ N Q + R S + P + ++L GL MA Sbjct: 223 AENINGIRTVQENRREIVNFARYDVRAIENLQAQIGSSRASQVMMPTV---DTLTGLAMA 279 Query: 267 AALSFAGWRYLDGHLDGAQLLIVLALLSTLSQPIESLLAQRFQALASKEAMAA----HAA 322 + G + + G LD ++ + + PI +L Q + AMA+ Sbjct: 280 IVVVVGGSQVVSGQLDVGVMVAFIFCVQRFFDPIRTLT---MQYTVMQRAMASGHRIFEV 336 Query: 323 LLAHTALPDGHAEVAAGEA--QIRLEQVSFGYRPGEPVLHNLDLDFPAGKTTVIVGPSGA 380 L L D A + I V+FGYRP +PVLH+L+L +T +VGP+G+ Sbjct: 337 LDIEVTLSDKKDAQALADVPPAIEFNHVTFGYRPDQPVLHDLNLHIQPYQTVALVGPTGS 396 Query: 381 GKSTLLQLLARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNIAAG 440 GK+++ L+ RF+D G + V GQD+R + L + MV Q+ LF +IA N+ G Sbjct: 397 GKTSIAALIHRFYDVWDGEVKVGGQDVRDLTLDSLGQCVGMVLQEPFLFSGTIADNMRYG 456 Query: 441 ARHATPEQLRAALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALLKDAPI 500 + AT EQ+ A +A + F+ +PDG DT L + GRNLS GQ+Q L+ ARALL I Sbjct: 457 LQWATREQVIEAAKAVRAHDFIMRLPDGYDTMLGQRGRNLSIGQRQLLSFARALLAKPKI 516 Query: 501 VLFDEMTSALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGS 560 ++ DE T+ +D+ + I+ AL L GRTTI++AHRL AD +VV+ +G++++ GS Sbjct: 517 LILDEATANIDSFTELEIQRALNVLRKGRTTIIIAHRLATIRDADVIVVLQKGRIVEKGS 576 Query: 561 HAELLRRCTLYQQLWSAWSQG 581 H ELL+ LY +L ++ ++ Sbjct: 577 HDELLKNKGLYAKLHASSNES 597 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,154,837 Number of extensions: 41074 Number of successful extensions: 434 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 388 Number of HSP's successfully gapped: 56 Length of query: 589 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 501 Effective length of database: 895,685 Effective search space: 448738185 Effective search space used: 448738185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)