BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2196.p
         (418 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981609|ref|YP_001355214.1| hypothetical protein mma_3524 [...   223   2e-59
gi|152980545|ref|YP_001355312.1| iron-regulated membrane protein...    80   3e-16

>gi|152981609|ref|YP_001355214.1| hypothetical protein mma_3524
           [Janthinobacterium sp. Marseille]
          Length = 432

 Score =  223 bits (567), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 220/430 (51%), Gaps = 42/430 (9%)

Query: 16  RQHLVLMHRWNGLVIALFLLVASITGSLLVFEDELELWLAPELHLAQPAAGQSATALLDP 75
           R   VL+HRW GL IALFLL++ +TG+++ ++ EL+ WL   L         S      P
Sbjct: 3   RASFVLLHRWCGLTIALFLLISGLTGAVISWDHELDEWLNESLFKVD-----SRGPYKQP 57

Query: 76  YQLRQRVAQELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPYVLGYDEIWVNPYTG 135
            +L Q V ++  PRA +  + L  + G    F V P ++PA+GR Y LGY++++V+P   
Sbjct: 58  VELAQ-VVEQADPRATVTFMPLQFEEGHAALFGVSPKVNPANGRLYELGYNQVFVDPVAA 116

Query: 136 AIQGRRDRQKISLKPAELMPFIFNLHHSLALPRV-----AGALLMGTVATLWTLDCLVGL 190
            I G+R+   +SL    LMPF++ LH+SL +P +      G   MG +A +W +DC  G 
Sbjct: 117 RIVGQREWGAVSLSRENLMPFLYKLHYSLHIPEMWGIDEWGVWFMGIIAVIWVVDCFFGF 176

Query: 191 ILTWPRARPFLV----------------KWKPAWLIKWQAGFYRVNLDLHRACALWLWVV 234
            LT P  R   +                +W+P+W ++W  G Y++N DLHRA +LW W +
Sbjct: 177 YLTLPVRREKKLAAVAATGADNRKTWWQRWQPSWRVRWSGGSYKLNFDLHRAFSLWTWGL 236

Query: 235 LLLLAWSSVMFNLRDQIYLPVMSRLL-----PFDTSWRGPARLPQPMAQPPMDWPQAHAM 289
           L +LA+++   NL  +++ PVMS +      PFD       R P    +P +      A+
Sbjct: 237 LFILAFTAFSLNLYREVFYPVMSLVSKVTPGPFDV------RTPVDPNKPILATLSFPAV 290

Query: 290 ARQAMAGFARERGLHIDFEDRLSFDRRRGLY--AYMVHSNADLRSDAGNTGLLIDARSGQ 347
             +A A  A  RG        + +    G+Y  ++    +       G   L  D ++G 
Sbjct: 291 IEKAKAE-ANSRGWEEPI-GSVFYSNTFGIYGASFFHPGDDHGGGGVGPAALYFDGKTGA 348

Query: 348 ILGHWLPTGDRSGNTFSNWIGALHMGQVWGLPWRIFLAALGLVVSLLTVTGIVIWWKKRA 407
             G+ LP    + + F      LH G++ GLP RI ++ +GL+V++L+VTG+VIWWKKR 
Sbjct: 349 YAGNKLPWQGTAADIFLQMQFPLHSGRILGLPGRILISFMGLLVAMLSVTGVVIWWKKRK 408

Query: 408 ARRAPTKQCR 417
           AR     Q R
Sbjct: 409 ARVRSELQVR 418


>gi|152980545|ref|YP_001355312.1| iron-regulated membrane protein
           [Janthinobacterium sp. Marseille]
          Length = 376

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 162/393 (41%), Gaps = 37/393 (9%)

Query: 16  RQHLVLMHRWNGLVIALFLLVASITGSLLVFEDELELWLAPELHLAQPAAGQSATA--LL 73
           R+  V +HRW  L +   L V  + G++L+    L+ W  PE   A  AAG ++T   ++
Sbjct: 18  RRIWVKIHRWLALSVGWILAVVGVLGAILILAQPLDKWAHPEFFKADTAAGSASTVTPVV 77

Query: 74  DPYQLRQRVAQELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPYVLGYDEIWVNPY 133
               +RQ++  +   ++      L P       F V    +P SG         +++NP 
Sbjct: 78  TLEAIRQQLITDFGSKSNFT---LRPPRVAGETFWVLVRGEPWSG--------TVYLNPL 126

Query: 134 TGAIQGRRDRQKISLKPAELMPFIFNLHHSLALPRVAGALLMGTVATLWTLDCLVGLILT 193
           TG  QGRR            + F F LH +L L +  G  ++  +A  + +  + GL+L 
Sbjct: 127 TGREQGRRGEYD------GFVNFAFKLHSALLL-KDTGKAILAWIALAYLVLLISGLVLW 179

Query: 194 WPRARPFLVKWKPAWLIKWQAGFYRVNLDLHRACALWLWVVLLLLAWSSVMFNLRDQIYL 253
           WP+      +W P+  I+   G  R   D+HR       V+ LL+A S           L
Sbjct: 180 WPK------RWPPSLRIELGKGLLRGLFDMHRIGGA---VLGLLIAVSVATGAYMAWRPL 230

Query: 254 PVMSRLLPFDTSWRGPARLPQPMAQPPMDWPQAHAMARQAMAGFARERGLHIDFEDRLSF 313
                 L   T+ + P    +  A+P +       +  +  A F  +   ++    + + 
Sbjct: 231 GQFVTTLSGSTAIKPPVLTKEESAKPAIV--TLDQLVARGQAVFPSDPVTYVQLPAKANQ 288

Query: 314 DRRRGLYAYMVHSNADLRSDAGNTGLLIDARSGQILGHWLPTGDRSGNTFSNWIGALHMG 373
             R  L        AD     G T + +  ++G++L  +       G    +++  LH G
Sbjct: 289 PIRLRLRL------ADDPHPNGLTSVYLQPKTGEVLAAYRWDQLDPGAKAFSFVYPLHTG 342

Query: 374 QVWGLPWRIFLAALGLVVSLLTVTGIVIWWKKR 406
           ++ G+         GL + +L VTGI +WW++R
Sbjct: 343 ELGGVALEALTFLSGLALGMLGVTGIWLWWRRR 375


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.139    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,019,176
Number of extensions: 42628
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 332
Effective length of database: 903,079
Effective search space: 299822228
Effective search space used: 299822228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)