BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2193.p (347 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane... 182 3e-47 gi|152981010|ref|YP_001355186.1| Fe2+-dicitrate sensor, membrane... 173 1e-44 gi|152980828|ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane... 171 6e-44 gi|152981311|ref|YP_001352850.1| Fe2+-dicitrate sensor, membrane... 170 1e-43 gi|152981259|ref|YP_001355182.1| Fe2+-dicitrate sensor, membrane... 165 3e-42 >gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 334 Score = 182 bits (462), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 182/344 (52%), Gaps = 27/344 (7%) Query: 7 PQPPAAAADP-VLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEAVWSELMAA 65 P+ A+ +P V+D+A+ WLV L + + A Q WR AD HE W + Sbjct: 2 PESNTASLNPQVIDKAVEWLVHLWSGSADLDSRAAWQK----WRAADPEHERAWLHIEDV 57 Query: 66 EAQFQ---RLVALPVPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQ 122 Q + V+ QP S R+RR+A + + VT+G A + + Sbjct: 58 NQQLRGRMNGVSADTAIASIAQPAS-----RSRRKALKTFSVVVTVGTA-----AWLSSE 107 Query: 123 AGLWEGLDGQRYATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDT 182 LW+ L + TATG+ L DGTQL L+TDT+V +R+D RL+ L +G++ I T Sbjct: 108 TMLWKTLTSE-IRTATGERLNFKLADGTQLELNTDTAVNVRYDSALRLVQLVRGELLITT 166 Query: 183 GKDALAAQHRPFLVQTAQARLQALGTRFDVRQQQGSTRLTVLEGRV--ATGQEPRTVI-- 238 KD+++ RPF+ +T R+ ALGT+F VRQ +++ VLEG V P V+ Sbjct: 167 AKDSVSPA-RPFMAETVAGRILALGTKFTVRQDGDISQVAVLEGAVELIPANNPGQVVRL 225 Query: 239 EPGETVDIDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYRHGWLQCDA 298 + G+ +A+G L A SA AW EG L+A MRL + +AE+ RYR G L CD Sbjct: 226 DAGQAGSFNAEGALTPPQAISAQ---AAWTEGVLIASDMRLDDFIAELKRYRPGHLSCDP 282 Query: 299 AVAQLRVSGVFQLQDSDAALESLAQALPVAIERRTRFWVRVVPA 342 A A LR+SGVF L D L SL + LPV ++ TR+W R+VPA Sbjct: 283 ASAGLRLSGVFPLNDMQKILTSLTEVLPVRVQTFTRYWTRIVPA 326 >gi|152981010|ref|YP_001355186.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 340 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 175/339 (51%), Gaps = 39/339 (11%) Query: 18 LDQAIA-----WLVKLRADAGRTAPDAVLQARIDAWRLADARHEAVWSELMAAEAQF--- 69 +D+AIA WL L G++ D R WR AD HE W +F Sbjct: 21 IDRAIAREAAQWLASLYD--GQSEEDIAACKR---WRAADPEHERAWQRAQRINQKFGIV 75 Query: 70 QRLVALPVPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGL 129 + V LP R R RRR + + + + +G ++ R A W + Sbjct: 76 PKAVGLP-------------ALGRKVRVDRRRAIKTLLVLMMAAPVGYVSYRYAP-WVAM 121 Query: 130 DGQRYATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAA 189 Y TA G+HR + L DGT++ L T TS+ + FDG QRLL L G+I + TG D+ Sbjct: 122 TAD-YRTAKGEHREIQLADGTRVHLGTATSIDIEFDGAQRLLRLHAGEIEVRTGSDSGHP 180 Query: 190 QHRPFLVQTAQARLQALGTRFDVRQQQG--STRLTVLEGRVATGQEPRTVIEPGETVDID 247 +RPF+V+T ++ALGTRF VR+ +G +TR++VLE V E R G+ + ++ Sbjct: 181 AYRPFIVKTTHGYIRALGTRFVVRRDEGATTTRVSVLEHAV----EIRPQAASGKLIVLN 236 Query: 248 AQGHLRRQAAG---SAAMDPTA--WLEGSLVARQMRLAEVLAEIARYRHGWLQCDAAVAQ 302 A R +G A+DP W G L A +MRL E AE+ RYR G L+CD AVA Sbjct: 237 AGQQTRFNESGFEQVEALDPHVADWTSGVLFASRMRLDEFAAELNRYRPGLLRCDPAVAG 296 Query: 303 LRVSGVFQLQDSDAALESLAQALPVAIERRTRFWVRVVP 341 LR++G FQL ++D L +L LPV + RTR+WV +VP Sbjct: 297 LRITGAFQLDNTDNILNALPDTLPVEVLFRTRYWVTIVP 335 >gi|152980828|ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 327 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 179/353 (50%), Gaps = 45/353 (12%) Query: 7 PQP-------PAAAADP-VLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEAV 58 PQP PA+ D ++ A WLVKL + DA A + W H+ Sbjct: 2 PQPDALNIATPASGIDKRIVMDAANWLVKLHSQEM----DASDHASLKRWCEQSTEHQRA 57 Query: 59 WSELMAAEAQFQRLVALPVPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGAL 118 W AA + A+P L+ L R R RR A + TL + + L Sbjct: 58 WH---AANELARNFGAVPA-----GLGLTTLGRQRNRRAAMK------TLAI----VCTL 99 Query: 119 AARQAGLWEGLDGQRYATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDI 178 A W + Y TATG+ L DG+ L L+T +SV + FD +QRLL L+ G++ Sbjct: 100 APTSWLAWTHMARDNYQTATGERSTYTLADGSSLMLNTGSSVDIVFDDKQRLLRLRAGEV 159 Query: 179 FIDTGKDALAAQHRPFLVQTAQARLQALGTRFDVRQQQGSTRLTVLEGRV---ATGQEPR 235 + T KD+ A RPF+VQT Q ++ALGTRF VRQ++ +T + VLE V A G Sbjct: 160 LVQTAKDS-APNPRPFIVQTGQGSVRALGTRFIVRQREDATEVAVLEHAVEVRALGVADP 218 Query: 236 TVIEPGE-----TVDIDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYR 290 +I G DI A L ++ +AW +G L+A + RL + LAE+ RYR Sbjct: 219 VIIAAGYGGSFGKTDIAALTPLANN------VNASAWTQGILIADRQRLEDFLAELGRYR 272 Query: 291 HGWLQCDAAVAQLRVSGVFQLQDSDAALESLAQALPVAIERRTRFWVRVVPAR 343 G L+CD AVA LR+SGVFQ +++ AL L + LPV + RTR+WV V+PA+ Sbjct: 273 PGILRCDPAVADLRISGVFQTSNTEQALNVLQETLPVTVLSRTRYWVTVLPAQ 325 >gi|152981311|ref|YP_001352850.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 330 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 172/333 (51%), Gaps = 28/333 (8%) Query: 17 VLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEAVWSELMAAEAQFQRLVALP 76 ++ QAI WLV L++ G + D + +AWR AD+RHE W L F+ Sbjct: 16 IVKQAIVWLVTLQS-GGASPTD---ERACEAWRAADSRHEQAWQRLHGLGQDFR------ 65 Query: 77 VPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGLDGQRYAT 136 PL + R RR L + GL + A R+ W+ + + T Sbjct: 66 ASSNVLASPLLRSVLRNSERNNRRIVLKSL-FGLALIGGTATVVRKQPAWQSAMAE-HQT 123 Query: 137 ATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRPFLV 196 ATG+ RR+ L DGT++ L+T T++ + FD + RL++L +G+I I+T +D RPF + Sbjct: 124 ATGEQRRIVLADGTRILLNTATAIDVHFDDQLRLVILHRGEILIETAQDEAG---RPFEL 180 Query: 197 QTAQARLQALGTRFDVRQQQ--GSTRLTVLEG--RVATGQEPRTVIEPGETVDIDAQGHL 252 T+ ++ +GTRF VR ST + VLEG RV GQ I GE Q H Sbjct: 181 ATSNGTIRPIGTRFTVRHSDRPSSTAVAVLEGAVRVTPGQGNSVRINAGE------QTHF 234 Query: 253 RRQAA-GSAAMDPTA--WLEGSLVARQMRLAEVLAEIARYRHGWLQCDAAVAQLRVSGVF 309 AA A+D +A W +G LV +MRLA+ + E+ RYR G L+CD AVA L VSG F Sbjct: 235 TELAALAPFALDDSAAAWTDGVLVVERMRLADFVTELDRYRPGVLRCDPAVADLLVSGSF 294 Query: 310 QLQDSDAALESLAQALPVAIERRTRFWVRVVPA 342 L+D DA L LA+ LP+ + TR+W V A Sbjct: 295 PLRDPDAVLALLAETLPLQVRTLTRYWATVTAA 327 >gi|152981259|ref|YP_001355182.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 329 Score = 165 bits (418), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 130/350 (37%), Positives = 175/350 (50%), Gaps = 28/350 (8%) Query: 1 MAARPSPQPPAAAADPVLDQAIAWLVKLRA-DAGRTAPDAVLQARIDAWRLADARHEAVW 59 M+A P P+ + + +A+ WLV L++ D R A + AW H W Sbjct: 1 MSALP-PESTLDVSPQIARRAVEWLVALQSGDVSREA--------LQAWLAQHPDHVRAW 51 Query: 60 SELMAAEAQFQRLVALPVPPEQWQQPLSELTRTRTRRQARRRWLGGV-TLGLGGLALGAL 118 + + + R VA P+ L+ T T R RR + + T G A Sbjct: 52 QRIESVNNKL-RGVASPL-----TTALAHATLTAPRSNKRRAAIKTLATFFFVGAT--AY 103 Query: 119 AARQAGLWEGLDGQRYATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDI 178 A + W TA G+ R + L DGT+L L+TDT+V +RF ++R +VL G+I Sbjct: 104 MAEEYLPWRAWSADER-TALGERRTIVLVDGTELVLNTDTAVNVRFTEQERRVVLLWGEI 162 Query: 179 FIDTGKDALAAQHRPFLVQTAQARLQALGTRFDVRQQQGSTRLTVLEGRVAT----GQEP 234 I T KDAL RPF+VQTAQ LQ +GTRF VRQQ +RL V EG V G Sbjct: 163 MITTAKDALELP-RPFVVQTAQGELQPVGTRFVVRQQTEVSRLDVFEGAVEIRPKDGAGL 221 Query: 235 RTVIEPGETVDIDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYRHGWL 294 + VI+ G+ V G S D AW EG +VA MRL + LAE++RYR G L Sbjct: 222 KRVIQAGQRVQFTHDGISDPVILKS---DDGAWTEGMIVASGMRLQDFLAELSRYRRGRL 278 Query: 295 QCDAAVAQLRVSGVFQLQDSDAALESLAQALPVAIERRTRFWVRVVPARG 344 CD A+A +RVSG + L D+D L +L LPV I TR+WV + PA+ Sbjct: 279 TCDPAIADMRVSGSYPLTDTDLILTALGSTLPVEIHFMTRYWVTIRPAQS 328 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 632,914 Number of extensions: 21467 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 16 Length of query: 347 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 263 Effective length of database: 910,473 Effective search space: 239454399 Effective search space used: 239454399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)