BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2192.p (173 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980397|ref|YP_001355175.1| ECF subfamily RNA polymerase si... 168 2e-43 gi|152981879|ref|YP_001354278.1| ECF subfamily RNA polymerase si... 164 3e-42 gi|152981850|ref|YP_001353720.1| ECF subfamily RNA polymerase si... 160 6e-41 gi|152981818|ref|YP_001352923.1| ECF subfamily RNA polymerase si... 150 3e-38 gi|152981821|ref|YP_001355187.1| ECF subfamily RNA polymerase si... 150 4e-38 >gi|152980397|ref|YP_001355175.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] Length = 168 Score = 168 bits (425), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/164 (51%), Positives = 112/164 (68%), Gaps = 1/164 (0%) Query: 1 MSVPHSADAQRFHTLYRQHHGWLQQWLRARLGSSVDAADLAQDTFVRVLGKPRALDEVRE 60 M P Q TLY HHGWLQ WL +LG++ DAADLAQDTF+R+LG R L ++E Sbjct: 1 MPTPEHTMHQEVATLYGDHHGWLQGWLCKKLGNAFDAADLAQDTFIRILGS-RDLSAIQE 59 Query: 61 PRAWLSRIAHGLVVDKVRRDEVERACLDAIARLPEPQAISPEARLLLVEALAAIDAMLEG 120 PRA+L+ +A GLV++ +R +ERA L+A+A LPEPQA S E R +++E L IDAML+ Sbjct: 60 PRAYLTTVAKGLVINWYQRQALERAYLEALALLPEPQAPSAEQRYIILETLYEIDAMLDA 119 Query: 121 LGARAREAFLMSRLEEMSYPEIARSMGVSLSSVEKYMAAAIRHC 164 L AR + FL+S++E M Y EIA M VS+ +V++YM A HC Sbjct: 120 LQARVKRVFLLSQIEGMKYEEIAVQMDVSVITVKRYMKQAFLHC 163 >gi|152981879|ref|YP_001354278.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] Length = 181 Score = 164 bits (415), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 82/164 (50%), Positives = 112/164 (68%), Gaps = 1/164 (0%) Query: 1 MSVPHSADAQRFHTLYRQHHGWLQQWLRARLGSSVDAADLAQDTFVRVLGKPRALDEVRE 60 MS S Q+ H LY +HHGWL WLR RLG+S DAADLA DTF+RVL K L +RE Sbjct: 13 MSAADSVQQQQVHLLYTEHHGWLHAWLRKRLGNSFDAADLAHDTFLRVLTKDVPL-AIRE 71 Query: 61 PRAWLSRIAHGLVVDKVRRDEVERACLDAIARLPEPQAISPEARLLLVEALAAIDAMLEG 120 PRA L+ IA G+V + RR ++E+A LDA+A LPE AISPEAR +++E L ID +L+G Sbjct: 72 PRALLTTIAQGMVANLYRRRQIEQAYLDALAVLPESHAISPEARAIMLETLVEIDRLLDG 131 Query: 121 LGARAREAFLMSRLEEMSYPEIARSMGVSLSSVEKYMAAAIRHC 164 L R+ FL+S+L+ + EIA + +S+ +V++Y+A A+ C Sbjct: 132 LAPLVRKVFLLSQLDGLGQAEIAERLAISIPTVKRYIAKAVAQC 175 >gi|152981850|ref|YP_001353720.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] Length = 173 Score = 160 bits (404), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 110/156 (70%) Query: 10 QRFHTLYRQHHGWLQQWLRARLGSSVDAADLAQDTFVRVLGKPRALDEVREPRAWLSRIA 69 Q+ HTLY HHGWL WLR ++G + AADLA D F+++LG+P AL +VREPRA+L+ IA Sbjct: 12 QQAHTLYSDHHGWLFGWLRKKMGCTHQAADLAHDAFLQILGRPEALVDVREPRAYLTTIA 71 Query: 70 HGLVVDKVRRDEVERACLDAIARLPEPQAISPEARLLLVEALAAIDAMLEGLGARAREAF 129 LV + RR ++E+A L +A LPE A SPE + L++E L AID +L+GL +AR AF Sbjct: 72 RRLVFESWRRRDLEQAYLAELAALPEDVAPSPEDQALVLETLLAIDRLLDGLSVKARSAF 131 Query: 130 LMSRLEEMSYPEIARSMGVSLSSVEKYMAAAIRHCY 165 LMS+L+ M+Y EIA + VS S V +YMA A+ CY Sbjct: 132 LMSQLDGMTYSEIAAELNVSASRVRQYMAQALSCCY 167 >gi|152981818|ref|YP_001352923.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] Length = 190 Score = 150 bits (380), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 78/166 (46%), Positives = 106/166 (63%) Query: 1 MSVPHSADAQRFHTLYRQHHGWLQQWLRARLGSSVDAADLAQDTFVRVLGKPRALDEVRE 60 MS A Q+ HTLY HHGWL WLR +LG + A DLA DTF+R++ +PR LD + Sbjct: 15 MSSFEPALQQQMHTLYSNHHGWLHGWLRKKLGCAFQAEDLAHDTFLRLIVRPRQLDSAYD 74 Query: 61 PRAWLSRIAHGLVVDKVRRDEVERACLDAIARLPEPQAISPEARLLLVEALAAIDAMLEG 120 PRA+L++IA GLVVD RR E+ERA L +A PE S E + +++E L +D +L Sbjct: 75 PRAYLTKIAQGLVVDLWRRQEIERAWLATLAAHPESVVPSAEHQAIIIETLIEVDRLLAQ 134 Query: 121 LGARAREAFLMSRLEEMSYPEIARSMGVSLSSVEKYMAAAIRHCYL 166 L + R A L++ L +M+Y EIA+ + VS V+KYMA A+ HC L Sbjct: 135 LPEKPRRALLLAHLHDMTYAEIAQVLDVSERMVKKYMAQAMLHCLL 180 >gi|152981821|ref|YP_001355187.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] Length = 184 Score = 150 bits (380), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 117/169 (69%), Gaps = 2/169 (1%) Query: 1 MSVPHSADAQRFHTLYRQHHGWLQQWLRARLGSSVDAADLAQDTFVRVLG--KPRALDEV 58 MSV S Q+ HTLY HHGWL WLR +LG + +AAD+AQDTF+R+L R+ ++ Sbjct: 14 MSVSESILQQQIHTLYSNHHGWLFGWLRKKLGCAHNAADIAQDTFLRILTAQDKRSDLDL 73 Query: 59 REPRAWLSRIAHGLVVDKVRRDEVERACLDAIARLPEPQAISPEARLLLVEALAAIDAML 118 REPRA+L+ +A ++++ RR +ERA L+A+A +P+ A +PE RL+++E L IDAML Sbjct: 74 REPRAYLTTVAGRVLLNHYRRLSLERAYLEALALVPDMYAPAPEDRLIILETLHEIDAML 133 Query: 119 EGLGARAREAFLMSRLEEMSYPEIARSMGVSLSSVEKYMAAAIRHCYLM 167 + L +AR AFL+++ E +SY EI+ + VS+ +V++YMA A C ++ Sbjct: 134 DALPHKARTAFLLAQFEGLSYAEISVRLDVSVRTVKRYMAQAFEECIML 182 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 342,655 Number of extensions: 10545 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 16 Length of query: 173 Length of database: 1,221,021 Length adjustment: 77 Effective length of query: 96 Effective length of database: 936,352 Effective search space: 89889792 Effective search space used: 89889792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)