BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2190.p
         (222 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982103|ref|YP_001352448.1| TetR family transcriptional reg...   154   5e-39
gi|152979947|ref|YP_001353253.1| TetR family transcriptional reg...    83   2e-17

>gi|152982103|ref|YP_001352448.1| TetR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 247

 Score =  154 bits (388), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 8   LEYGNELIHNRAMSQLS----AKNQRGRPREFDYDEVLERAIRLFRQRGYGATSIADLVE 63
           +++GN+  HN  M   S      N RGRPREFD D+ L++ I LF  RG+   SI D+ E
Sbjct: 30  IDFGNDRFHNIGMKPASHPAALSNPRGRPREFDMDDALDKVIPLFCARGFHGASINDIAE 89

Query: 64  ATGLTRGSLYKAFKDKKSIYMTAFERYVASGHERIRAIARAEGSGRERVARLLAHYLEQS 123
              LT GS+YKA KDK+ +++ A +R ++     +R    A  SGR+++   L  Y   S
Sbjct: 90  TMELTVGSIYKALKDKRGVFLAAIDRQLSVRQGALRQTIAAATSGRDKLRAALMFYAGVS 149

Query: 124 SGEPGRLGCLVVATGVEASVLEEEIAQLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAP 183
           +      GCL+V+T VE +  +EEIA     +LKR E +L EL+++G  D SIAA  N  
Sbjct: 150 NTGDDMQGCLIVSTTVELATFDEEIANRARDSLKRREVILNELLKLGETDGSIAAGSNNA 209

Query: 184 VAAKSLLCFLQGLRVVGKSDAHRPHLNKKMLAMAMKMLD 222
             A+ +LC +QGL ++GK+   R  L   ++  AMK+LD
Sbjct: 210 ATARLMLCLMQGLIIIGKAGRTRKEL-IAVVDAAMKILD 247


>gi|152979947|ref|YP_001353253.1| TetR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 211

 Score = 82.8 bits (203), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%)

Query: 15  IHNRAMSQLSAKNQRGRPREFDYDEVLERAIRLFRQRGYGATSIADLVEATGLTRGSLYK 74
           + N++      + + GRP  FD +  LERA+ +F + GY A S+++L  A G+T  SLY 
Sbjct: 1   MENKSEKCDKPRKKGGRPLSFDREAALERAMLVFWRYGYEAASLSELTSAMGITPPSLYA 60

Query: 75  AFKDKKSIYMTAFERYVASGHERIRAIARAEGSGRERVARLLAHYLEQSSGEPGRLGCLV 134
           AF DK+ +++ A ERY     + ++ +     + R+ + RLL      ++      GCLV
Sbjct: 61  AFGDKEQLFLEAVERYSTKSCDALQCLFAEAPTARDAIERLLQSSAVDNTCPSHPPGCLV 120

Query: 135 VATGVEASVLEEEIAQLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAPVAAKSLLCFLQ 194
           V      S   E +     +    +E ++   I  G+++  + A  +    A      +Q
Sbjct: 121 VTAATNCSASAEHVQTAMTERRDNVETMIKTRIEQGVKEGELPAGTDPGTLASFYATVIQ 180

Query: 195 GLRVVGKSDAHRPHL 209
           G+    +    R  L
Sbjct: 181 GMSTQARDTGDRDKL 195


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 436,146
Number of extensions: 16400
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 142
Effective length of database: 925,261
Effective search space: 131387062
Effective search space used: 131387062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)