BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2189.p (223 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981323|ref|YP_001354612.1| two components system response ... 184 5e-48 gi|152981350|ref|YP_001354553.1| two-components system response ... 178 2e-46 gi|152981423|ref|YP_001354086.1| two-components system response ... 167 5e-43 gi|152983128|ref|YP_001354753.1| two-component response regulato... 164 3e-42 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 159 1e-40 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 184 bits (466), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 145/222 (65%), Gaps = 4/222 (1%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRIL+VEDD ++ + AL A Y+ D V +G A ALA Y +LLD+ LP DGL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 SVLRQLRSH-STIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +VLR+LR S +PVLI+TARD + DR+AGLD GADDY+ KPFD+ E AR+RA++RR Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 A +L +G L D+ A + Q PV LS RE A+ L+ R G ++++ ++ +R++ Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQ-PVELSVRELAVFEVLLSRQGQVVTKEQMIDRLF 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLD--RDAIKNVRGMGWMVARN 219 GWG++ SNA+E +H RKKL+ I+ VRGMG+++ ++ Sbjct: 180 GWGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLLEKS 221 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 178 bits (452), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/223 (42%), Positives = 148/223 (66%), Gaps = 4/223 (1%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRILL EDD+++ + + +L+ + YA D V +GA A + L+ QD++ ++LDLGLP GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 SVLRQLRS-HSTIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 VL++LR+ +S +PVLI+TA D ++ R+ GLD GADD++ KPF + EL AR+RA+ RR + Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G V+ +G L+ D + A Q + LSARE LL L++R G ++S+ +L + + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQ-MLDLSARELGLLEVLLQRSGRLVSKEQLVDHLC 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIK--NVRGMGWMVARNT 220 W EEV +NA+E +H LRKK++ ++ VRG+G+ + + T Sbjct: 180 EWSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEKFT 222 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 167 bits (423), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MR LLVEDD +G+ V AL++A + DW DG A ++++ +LDLGLP DGL Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60 Query: 61 SVLRQLRS-HSTIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 SVLR+ R+ T PVLI++AR +++ G+++GADDYL KPF++ EL+AR RA++RR + Sbjct: 61 SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G A VL G L LD TA +Q PV LS EF L + G +S EL E +Y Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQ-PVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLY 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMVA 217 G E V++NA+E L+ +R+K D I+ RG G+M++ Sbjct: 180 GDSEGVDTNAIEALVLRMRRKFGADLIETRRGFGYMLS 217 >gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 239 Score = 164 bits (416), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 138/215 (64%), Gaps = 2/215 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 M++L+VEDD +I + + L+ A V+ A A+ D++ ++LDLGLP DGL Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 SVLRQLRSHS-TIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 ++L++ RS ++PV+++TARD ++ RIAGL +GADDY+LKPFD+GEL AR+ AV+RR Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G AT + G L LD W + +ALS REF +L+ L G L+ + L +R++ Sbjct: 140 GRATQEITAGPLRLDPQYGQV-WLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVF 198 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGW 214 G ++ SNA+ IH++R+KL +AI+ RG+G+ Sbjct: 199 GEDIQISSNALNVHIHNIRRKLGAEAIETSRGLGF 233 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 136/220 (61%), Gaps = 5/220 (2%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 M+ILLVED+ GE +R L++A + DW DGA L Q+ YE V+LD+ LP DG Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 SVLRQLRSHSTIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKSG 120 +LR+LR PVL +TARD V+DR+ GL+ GADDYL+KPF EL+AR+R ++RR Sbjct: 61 QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120 Query: 121 AATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIYG 180 + +++ + +DV + + + L+A+EF+LL L +R G +LSR+ + +++ Sbjct: 121 RESSLIEIADMQIDVMKRRVT-RNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 181 WGEEVESNAVEFLIHSLRKKLD----RDAIKNVRGMGWMV 216 + ++N V+ I LR KLD R I+ VRG+G+++ Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVL 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 475,510 Number of extensions: 17007 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 34 Length of query: 223 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 143 Effective length of database: 925,261 Effective search space: 132312323 Effective search space used: 132312323 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)