BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2188.p (451 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 174 8e-45 gi|152982775|ref|YP_001354611.1| two-components system response ... 152 4e-38 gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Ja... 115 5e-27 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 98 1e-21 gi|152982364|ref|YP_001355202.1| two-component sensor histidine ... 97 2e-21 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 174 bits (442), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 179/304 (58%), Gaps = 8/304 (2%) Query: 130 IVLAQETDARNSIAYQSAWRALLPVLILVPVLLLALRRIVRKLFAPLSSLRQEIDQRRDD 189 + +A+ D R+ + Q ++P I++P+ L+ + + + PL L+Q I +RR D Sbjct: 213 VQVAETLDKRSQLVNQIIKGVIVPEFIILPIALVLVWFALTRGLRPLVELQQRIRERRPD 272 Query: 190 QLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAE-R 248 L+PI + +P EI P V ++N +L R+ ++ Q+RF+ADAAH+++TPL + +Q+E Sbjct: 273 DLSPIDSGYVPEEILPLVGSLNEMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELA 332 Query: 249 LQQSELSDTARERLQRLSSGIERSKALVTQLLALARTQSQG-MTEPVARSRFALREAVRP 307 L+Q++ + + L++L+ + + ++ QLLALAR ++Q T P+ L E R Sbjct: 333 LRQTDQVEIHKS-LEQLAKSSKSATRMINQLLALARAENQTPTTRPL--QPLELSELARD 389 Query: 308 VLEDLLPLAQHKDIDLGVDS-SLDAEVDTSLADLQLLLSNLIDNAIRYTPAGGCISLALV 366 +++ + + +K IDLG + V+ L+ LL+NLIDNA+ YTPAGG ++ + Sbjct: 390 TVQEWVQTSFNKKIDLGFEQPDYHIMVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVR 449 Query: 367 TGAQVRPGMARLELTDNGPGIPAAERERVFEPFYRLDPSAAPGSGLGLAIAQSLAQRLGI 426 + R +A LE+ D GPGI E +R+FE FYR+ S GSGLGLAI + +AQ+ G Sbjct: 450 ADEEAR--LAYLEVEDTGPGIAPHEHKRIFERFYRILGSNVEGSGLGLAIVREIAQQHGA 507 Query: 427 TIGL 430 I + Sbjct: 508 EIDI 511 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 32/365 (8%) Query: 86 TDADTVGVKDELPLPAGLKDGFQTVF----MVHEDFRVYV---QPL---PSGRRIVLAQE 135 TD + LP +K G +T + + +D R+ + +PL P+ ++ E Sbjct: 98 TDGKLIAGDPNLPAHQTIKSGRETAYYDGILQGQDVRIALLRGKPLLEPPAEAVMIQIAE 157 Query: 136 TDARNSIAYQSAWRALLPVLILVPVLLLALR-----RIVRKLFAPLSSLRQEIDQRRDDQ 190 T + RALL LIL VLL+ + R V +PL L+QE+ R Sbjct: 158 TQVKRD----RHERALLIQLILPQVLLILIAGILIWRGVAHGLSPLRKLQQELAMRSHLD 213 Query: 191 LAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAERLQ 250 L+PIA +P E+ P V A+N L+TRV + Q RF+AD AH+LRTP+ L AE Sbjct: 214 LSPIAADNVPGEVEPLVGAVNDLMTRVDGVLGFQGRFIADTAHQLRTPVAGLKAHAELAL 273 Query: 251 QSELSDTARERLQRLSSGIERSKALVTQLLALARTQSQGMT---EPVARSRFALREAVRP 307 + + L L + ER LV+QLL+LAR + + P ++ ALR A Sbjct: 274 RETDPVQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNVAVNFAPFDLNQLALRTA--- 330 Query: 308 VLEDLLPLAQHKDIDLGVDSSLDAE-VDTSLADLQLLLSNLIDNAIRYTPAGGCISLALV 366 ++ +PLA K IDLG +++ ++ A + +++NL+DNAIRYTP+GG +++ + Sbjct: 331 --QEWVPLAYKKQIDLGFETAEQTVLLNGEAARVTEMINNLVDNAIRYTPSGGRVTVRVH 388 Query: 367 TGAQVRPGMARLELTDNGPGIPAAERERVFEPFYRLDPSAAPGSGLGLAIAQSLAQRLGI 426 + A L ++D+G IP ER+R+FE F+RL + GSGLGLAI +A Sbjct: 389 KDEE----GAHLVVSDDGTRIPIDERQRIFERFHRLLGNHEEGSGLGLAIVHEIATLHNA 444 Query: 427 TIGLE 431 I LE Sbjct: 445 RITLE 449 >gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Janthinobacterium sp. Marseille] Length = 445 Score = 115 bits (288), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 130/434 (29%), Positives = 203/434 (46%), Gaps = 47/434 (10%) Query: 16 AILLVAVGAGGFGFISAYRESIRVQDDL---LMQVGALLAR-VGGSLPAEGAVGSYPGND 71 A+L+ V F +SA + VQ++L L Q ++ AR V G L G VG P + Sbjct: 8 AVLVTGVALVLFWALSAIWMTNSVQENLDATLDQRLSMSARMVAGILKDTGIVGRAPREE 67 Query: 72 HESRISVQWLPGPDTDADTVG-----------VKDELPLPAGLKDGFQTVFMVHEDFRVY 120 +S + V G T+ ++ PLP GL T + + +R Y Sbjct: 68 WDSALKVGGGKGIACQIRTMRGEIVAETENGPFRNVEPLPLGLS----TKIVDGQTWRAY 123 Query: 121 VQPLPSGR-RIVLAQETDARNSIAYQSAWRALLPVLILVPVLLLALRRIVRKLFAPLSSL 179 L SG+ RI + + R A LP L+ V LLAL + K PL++L Sbjct: 124 T--LQSGQYRITASDLVEERRHFVDAVLLSAGLPFLVAVIGGLLALWIGIGKGLGPLAAL 181 Query: 180 RQEIDQRRDDQLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPL 239 + + ++ + LAPIA E+ P ++++N++L RV + + QR F AAHELRTPL Sbjct: 182 SKTLQKKNANDLAPIADQYASKELRPVIDSLNQMLGRVSSTLVQQRAFTDGAAHELRTPL 241 Query: 240 TALSLQAERLQQSELSD-TARE-RLQRLSSGIERSKALVTQLLALARTQSQGMTEPVARS 297 T + LQ ++LS TA E L G+ R + Q++ALAR S + E Sbjct: 242 TII---GTHLQVAKLSTGTALEVSLNSAEEGVRRLNHTLEQMMALARADSVTVEEEC--- 295 Query: 298 RFALREAVRPVLEDL---LPLAQHKDIDLGV-DSSLDAEVDTSLADLQLLLSNLIDNAIR 353 ++V V+E+L LP + + + + A+V SL L + NL+DNA R Sbjct: 296 -----DSVSLVIEELVERLPTVSMRRLRIDFAEQDAGAKVPASL--LHTAVRNLLDNAFR 348 Query: 354 YTPAGGCISLALVTGAQVRPGMARLELTDNGPGIPAAERERVFEPFYRLDPSAAP--GSG 411 Y+ G + L++ + + R+ + D+GPG+ + V + F+R S GSG Sbjct: 349 YSM--GMVLLSVTFDNHKK--LCRISVADSGPGLTEEQISVVSQRFWRGKTSTHTQDGSG 404 Query: 412 LGLAIAQSLAQRLG 425 LGL+I ++ R G Sbjct: 405 LGLSIVSAIVGRYG 418 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 26/291 (8%) Query: 148 WRALLPVLILVPVLLLALR---RIVRKLFAPLSSLRQEIDQRRDDQLAPIATAALPTEIA 204 W L+ +I + V A++ R +RK+ + ++R R D +L P +P E+A Sbjct: 185 WATLIVSVIALIVAWCAVQWGHRPIRKVSRDIRAIRS---SRLDVRLDP---TEVPIELA 238 Query: 205 PFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAE-RLQQSELSDTARERLQ 263 + N +L R+++ F AD AHELRTP+T L +Q E L QS S RE L Sbjct: 239 ELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYREILY 298 Query: 264 RLSSGIERSKALVTQLLALARTQSQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDIDL 323 ER +++ +L LA+T++ + S ++ ++ + + LA+ +I L Sbjct: 299 SNLEEFERMSRMISDMLFLAQTEND--PHNLHLSDISIAAMIQDLFDYFEALAEEANITL 356 Query: 324 GVDSSLDAEVDTSLADLQLL---LSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLEL 380 +L+ AD +++ LSNLI NAI+Y+ G + + L QV + + Sbjct: 357 ----TLEGNAAPVKADREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQV----TTVSV 408 Query: 381 TDNGPGIPAAERERVFEPFYRLDPS---AAPGSGLGLAIAQSLAQRLGITI 428 + I + ++F+ F+R DPS A G+GLGLAI +S+A+ G T+ Sbjct: 409 ENPAGQIAREDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTV 459 >gi|152982364|ref|YP_001355202.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 676 Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 21/247 (8%) Query: 207 VEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAERLQQSELSDTARE--RLQR 264 +E + + L + A Q++F+A +HELRTPL + A+ + + +A+ RL++ Sbjct: 425 MEEVEKALAMERAAHEEQQQFIAMVSHELRTPLAVIDAAAQNMTREGEQGSAKAPLRLEK 484 Query: 265 LSSGIERSKALVTQLLALARTQ--SQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDID 322 + ER +L T L+ R + + G+ L +AV PLA + Sbjct: 485 IHRATERLSSLFTHYLSSERLKMFAHGIQPTNTTLHLLLEDAVNMAK----PLADNHQFL 540 Query: 323 LG---VDSSLDAEVDTSLADLQLLLSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLE 379 + V + A+ D L+L++S L++NA++YTPAG + V A+ ++ Sbjct: 541 IASEAVKKPVRADADI----LRLVISTLLNNAVKYTPAGSTV----VLRAEPVSNGWHID 592 Query: 380 LTDNGPGIPAAERERVFEPFYRLDPSAAP-GSGLGLAIAQSLAQRLGITIGLEMADPVAQ 438 +TDNGPGI A ERE++F +YR S + G+GLGL +A+ L +R G T+ L + +P Sbjct: 593 VTDNGPGIAADEREKIFNRYYRGRISGSKAGTGLGLTLARHLIERHGGTLEL-LDNPAGG 651 Query: 439 RGLRVVL 445 R+ L Sbjct: 652 STFRIFL 658 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 890,641 Number of extensions: 35956 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 28 Length of query: 451 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 365 Effective length of database: 903,079 Effective search space: 329623835 Effective search space used: 329623835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)