BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2187.p
         (188 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980646|ref|YP_001352048.1| cytochrome B561 [Janthinobacter...    79   2e-16

>gi|152980646|ref|YP_001352048.1| cytochrome B561 [Janthinobacterium
           sp. Marseille]
          Length = 174

 Score = 78.6 bits (192), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 2/170 (1%)

Query: 13  RYHPYSVILHWVMFLLFVVALATIEYREDIPKGDPLRDLLRTVHMHAGQLVLILVILRLI 72
           RY   ++ LHW+M +L + A        DIP   P +    + H   G  V  L  LRL+
Sbjct: 3   RYTLTAIALHWLMAILIIAAFLLGLTMVDIPGLTPTKLKYFSWHKWLGVTVFGLACLRLL 62

Query: 73  ARKMLGVPPELP-MPKLQRLGAHAVHLLLYVVMIGLPLTGILFTQAGGRDVVFFGMT-LP 130
                  P   P M   Q+  A   H L+YV++  +PL+G  ++ A G  VV+ G+  LP
Sbjct: 63  WALSHPAPAHPPSMADWQKKAARVSHGLMYVLIFAVPLSGYFYSLAAGVPVVYLGIVPLP 122

Query: 131 VILAKDMALRGPIKEVHELMGNAVYFLVGLHVLGALWHQLFDRMPILQRM 180
           V +  D  L+  +K+VH      +  +  LH+L  + HQL DR   LQRM
Sbjct: 123 VFIGPDQELKALLKQVHYACNVTLLIVFFLHILAVIKHQLIDRDRTLQRM 172


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.147    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 457,395
Number of extensions: 18820
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 110
Effective length of database: 932,655
Effective search space: 102592050
Effective search space used: 102592050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)