BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2186.p (473 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 136 3e-33 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 133 3e-32 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 128 6e-31 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 126 4e-30 gi|152982803|ref|YP_001351714.1| two-component system sensor pro... 119 3e-28 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 119/391 (30%), Positives = 199/391 (50%), Gaps = 16/391 (4%) Query: 79 DRLVQII-DADGHILGRSNNLGAGTLPVSASLLKRLAQGQTVFETLPHASEEPLRMVSV- 136 DRL+ ++ D DG+I+ +N+ G+LP A L + L ++ R ++ Sbjct: 83 DRLIIMLKDVDGNIILHTNS-DQGSLPTIAVLPLEMNPVPRSITLLWTSTGLTARAIAAQ 141 Query: 137 -PVRLGQQRYAVLVAGSLDDADHILGS--AALLFAGLAVALLVALAAASALLTNRLFGTV 193 VR G+ + ++VA + D +L + + A L LL AL +L R V Sbjct: 142 GKVRSGE-KIVIVVARTASDRMELLKAYRVEIGMAALCGTLLAALLGY--ILVRRGLRPV 198 Query: 194 DRIAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEI 253 IA QA I+ L RL + E+ LV N+ML RL+ +F+ F+A+ AH++ Sbjct: 199 RLIAGQASSITAHRLDTRLDLSSAPQELHELVQAFNAMLDRLDGSFQRLSQFSADLAHDL 258 Query: 254 RSPLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSM 313 R+PL+ L + ++AL + RS EDY L S ++E LT MVE +L LAR++ + Sbjct: 259 RTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLFLARVEHTHVMLNK 318 Query: 314 ECIGLDSLVREALARWQGVAEARRIRLVLQAPQAVQARIGERAAML--VLNNLLDNAIKF 371 + L ++ ++G+A+ +RL ++A R+ A +L + NL+ NAI + Sbjct: 319 SALSLPEELQRIADYFEGLADEAGVRLTVEA----GGRVYADAILLRRAIGNLVANAIPY 374 Query: 372 SPPDTAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLS 431 +P I + A GAT+ V + G G+AA + +F RFYRG A++ + GLGL+ Sbjct: 375 TPRGATIVLKGVMTADGATVSVVNPGAGIAAQHIPHVFNRFYRGDAARSNSATSTGLGLA 434 Query: 432 IVRAVLEGYGASISLGNRSDGAGAECRLHFP 462 IV++++ +G ++ + +G E L FP Sbjct: 435 IVQSIMALHGGRATVTSEENGL-TEFSLIFP 464 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 156/282 (55%), Gaps = 7/282 (2%) Query: 165 LLFAGLAVALLVALAAASALLTNRLFGTVDRIAAQARRISDANLGERLADPDSDDEIGHL 224 L +A L V+++ + A A+ + +++ R I + L RL + E+ L Sbjct: 183 LWWATLIVSVIALIVAWCAVQWGH--RPIRKVSRDIRAIRSSRLDVRLDPTEVPIELAEL 240 Query: 225 VDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYVATLQSC 284 + N ML R+E F NF+A+ AHE+R+P++ L + E+AL + RS+ +Y L S Sbjct: 241 AASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYREILYSN 300 Query: 285 LDEVGALTSMVEELLQLARLDAGQEGRSMECIGLDSLVREALARWQGVAEARRIRLVLQA 344 L+E ++ M+ ++L LA+ + + I + +++++ ++ +AE I L L+ Sbjct: 301 LEEFERMSRMISDMLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANITLTLEG 360 Query: 345 PQA-VQARIGERAAML-VLNNLLDNAIKFSPPDTAIEVSVSSDASGATLVVADRGPGVAA 402 A V+A +R ML L+NL+ NAI++S P + + V +S D T+ V + +A Sbjct: 361 NAAPVKA---DREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQIAR 417 Query: 403 TDMGLLFERFYRGRASQVQQTSGAGLGLSIVRAVLEGYGASI 444 D+ LF+RF+R S+ ++ SGAGLGL+IV+++ E +G ++ Sbjct: 418 EDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTV 459 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 133/238 (55%), Gaps = 10/238 (4%) Query: 219 DEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYV 278 +EI LV +LN ML RL ++ ++Q+ F A+AAH++++PL+ +R + ELALR+ E + Sbjct: 284 EEILPLVGSLNEMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDQVEIH- 342 Query: 279 ATLQSCLDEVGALTSMVEELLQLARL-DAGQEGRSMECIGLDSLVREALARWQGVAEARR 337 +L+ + T M+ +LL LAR + R ++ + L L R+ + W + ++ Sbjct: 343 KSLEQLAKSSKSATRMINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKK 402 Query: 338 IRLVLQAPQAVQARIGERAAML--VLNNLLDNAIKFSPPDTAIEVSVSSDASG--ATLVV 393 I L + P + A ML +LNNL+DNA+ ++P V V +D A L V Sbjct: 403 IDLGFEQPD-YHIMVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEV 461 Query: 394 ADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLSIVRAVLEGYGASISLGNRSD 451 D GPG+A + +FERFYR S V+ G+GLGL+IVR + + +GA I + N + Sbjct: 462 EDTGPGIAPHEHKRIFERFYRILGSNVE---GSGLGLAIVREIAQQHGAEIDILNNPN 516 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 126 bits (316), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 145/270 (53%), Gaps = 7/270 (2%) Query: 196 IAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRS 255 +AA+A+ ++ N+ ER+ E+ L LN+ML RL+ F+A+ AHE+R+ Sbjct: 190 MAARAQAVTSQNMKERMPVDAVPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRT 249 Query: 256 PLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSMEC 315 P+S + T+ + L + RSA DY +L S +E+ L + ++L LA+ + G S+E Sbjct: 250 PISNMLTQTHVVLNQSRSAADYRDSLSSNAEELQRLGKTISDMLFLAQTENGLALPSVEK 309 Query: 316 IGLDSLVREALARWQGVAEARRIRLVLQAPQAVQARIGERAAM-LVLNNLLDNAIKFSPP 374 + + + L ++ +AE + + L + V IG+R LNNLL NA++++P Sbjct: 310 LNMAQECQALLEFYEALAEEKEVTLRCEGDAVV---IGDRLMFRRALNNLLSNALRYTPS 366 Query: 375 DTAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQ-QTSGAGLGLSIV 433 I + + + +G + V + G + LF+RFYR S+ + ++ AGLGLSI Sbjct: 367 HGTISIKIKAAQAGTVVTVENDGKEIPIEIQPHLFDRFYRADKSRKKSESDSAGLGLSIT 426 Query: 434 RAVLEGYGASISLGNRSDGAGAECRLHFPT 463 RA+++ +G S+S+ S + L+FP+ Sbjct: 427 RAIMQAHGGSVSVV--SGESKTAFSLYFPS 454 >gi|152982803|ref|YP_001351714.1| two-component system sensor protein [Janthinobacterium sp. Marseille] Length = 463 Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 159/325 (48%), Gaps = 21/325 (6%) Query: 123 LPHASEEPLRMVSVPVRLGQQRYAVLVAGSLDDADHILGSA---ALLFAGLAVALLVALA 179 LP A E P +V + +G L A + D + +A A LF + VA L Sbjct: 136 LPAAGERP----AVTLTVG------LDASAFDTTSRAINAALVIAFLFGVVVVAGLGWWI 185 Query: 180 AASALLTNRLFGTVDRIAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAF 239 A LL VD ++ A +S NL ERL D E+ LV + N L R+E+A+ Sbjct: 186 ARRGLLA------VDDLSRHAENLSPLNLAERLPTGDMPSELNGLVLSFNGALGRVEQAY 239 Query: 240 ELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELL 299 F A+ AHE+R+PL L + ++ L R RSAE+ LQS L+E+ L +++ ++L Sbjct: 240 VQLSTFNADVAHELRTPLGNLIGQTQVMLSRERSAEELTEVLQSNLEELERLRTIINDML 299 Query: 300 QLARLDAGQEGRSMECIGLDSLVREALARWQGVAEARRIRLVLQAPQAVQARIGERAAML 359 LA+ D G ++E + S V ++ + E + LV++ +A I + Sbjct: 300 FLAQADRGIRAANLELTSIASEVLKSAEFLDMLIEDAGVSLVVEGD--AEASIDKSLFGR 357 Query: 360 VLNNLLDNAIKFSPPDTAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQ 419 + NLL NAI+ ++ I V + + V+++G V + LFERFYR +S+ Sbjct: 358 AITNLLYNAIQHCDRNSTIRVHIEERDHAVAINVSNQGVPVEPHHLERLFERFYRVDSSR 417 Query: 420 VQQTSGAGLGLSIVRAVLEGYGASI 444 + GLGL+IV+A+ +G ++ Sbjct: 418 TDSDNSHGLGLAIVKAIAHMHGGTV 442 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 945,437 Number of extensions: 35649 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 28 Length of query: 473 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 386 Effective length of database: 899,382 Effective search space: 347161452 Effective search space used: 347161452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)