BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2185.p (225 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983086|ref|YP_001353412.1| response regulator of copper se... 179 8e-47 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 173 9e-45 gi|152981360|ref|YP_001351713.1| two-components system response ... 172 2e-44 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 171 2e-44 gi|152981344|ref|YP_001351979.1| two-components system response ... 161 3e-41 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 179 bits (455), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 103/223 (46%), Positives = 138/223 (61%), Gaps = 6/223 (2%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEA--LAHLGSAFDVAIFDRMLPGIDG 58 M +L+VED+ K L QGL E GF V A++G + LA GS +D+ I D MLP IDG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGS-YDLIILDVMLPDIDG 59 Query: 59 LTLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRR- 117 + +R A P L LTARD + ++V+GL G DDY+ KPFAF ELLAR+ LLRR Sbjct: 60 WKILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRG 119 Query: 118 -PSQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQ 176 PS L V LQ++DL +DL R G+RL LT KE+ +L LVRH G V+ R +A Q Sbjct: 120 NPSPL-VDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 177 VWHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 +W + + N+IDV I+ LR K+D + P +I T+RG G+ + Sbjct: 179 IWDINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVL 221 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 173 bits (438), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 138/223 (61%), Gaps = 6/223 (2%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEAL-AHLGSAFDVAIFDRMLPGIDGL 59 M IL+VED+ K A + QGL+E GF V VA +G + + A+D+ + D MLP +DG Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 60 TLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRR-- 117 + + +R A Q P+L LTAR ++ ++V+GL G D YL KPFAF ELLA + LLRR Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 118 -PSQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQ 176 P+Q LQ+ADL +DL + R GQR+ LT KE+A+L LL R G V+ R +A Q Sbjct: 121 VPAQSD--QLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQ 178 Query: 177 VWHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 +W + + N+IDV I+ LR K+D P +I T+RG G+ + Sbjct: 179 IWDMNFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGYTL 221 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 172 bits (435), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 141/226 (62%), Gaps = 4/226 (1%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEA--LAHLGSAFDVAIFDRMLPGIDG 58 M ILL+ED+ K L +GL E+G V VA++G + LA G +D + D MLPG DG Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGD-YDAIVLDIMLPGRDG 59 Query: 59 LTLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRP 118 + + Q +R+ Q P++MLTAR + +++ GL G DDYL KPF+F ELLARL AL RR Sbjct: 60 IEVLQALRR-QKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRG 118 Query: 119 SQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQVW 178 + H+++ADL IDL+A +R +RLDLT KE+A+L L RH G V+S+ + E VW Sbjct: 119 RPQESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVW 178 Query: 179 HADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCIRRQGQ 224 + + N+++V IK LR K+D ++ T+RG G+ + + + Sbjct: 179 DVNFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEERSE 224 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 171 bits (434), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 142/220 (64%), Gaps = 2/220 (0%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALA-HLGSAFDVAIFDRMLPGIDGL 59 M ILLVED+ K+ L +GL+E GF V A G E L L ++++ I D MLP +DG Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 60 TLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRPS 119 L + +R+ + P+L LTARD + ++V+GL G DDYL KPF+F EL+AR+ LLRR Sbjct: 61 QLLRELRKVR-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 120 QLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQVWH 179 + +++AD++ID++ V R+G+RLDLT KE+++L LL + G V+SR +A QVW Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 180 ADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 + + N++DV I+ LR K+D +I+T+RG G+ + Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVL 219 >gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 161 bits (407), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/229 (40%), Positives = 138/229 (60%), Gaps = 6/229 (2%) Query: 1 MH-ILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALA-HLGSAFDVAIFDRMLP-GID 57 MH L++EDD A +A+GL+E G+E V G E + +G +DV I DRMLP G+D Sbjct: 1 MHRCLIIEDDTHNALYIAKGLKEIGYEATVCADGIEGMELAVGGEWDVIILDRMLPQGMD 60 Query: 58 GLTLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLR- 116 GL++ +R+ + P+L+L+A A+ E+V GL AG +DYL KPFAF EL AR+ ALLR Sbjct: 61 GLSILAALREMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRW 120 Query: 117 -RPSQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAE 175 +P+++ + L + DL+++LL V R G+ L L +E+ +LV ++ H G V++R L E Sbjct: 121 TQPNEV-IRELCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLE 179 Query: 176 QVWHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCIRRQGQ 224 VW+ N+ID HI LR K+D +I T R G+ + Q Sbjct: 180 SVWNYQFDPQTNVIDAHISRLRNKVDKGFAVPLIHTRRNLGYILTPNPQ 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 464,891 Number of extensions: 17134 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 28 Length of query: 225 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 145 Effective length of database: 925,261 Effective search space: 134162845 Effective search space used: 134162845 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)