BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2182.p (493 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-li... 371 e-104 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 192 3e-50 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 166 3e-42 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 155 4e-39 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 155 4e-39 >gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 530 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/491 (41%), Positives = 291/491 (59%), Gaps = 31/491 (6%) Query: 32 GCAVGPDFKQPAAPQVSAYTAEHIEASQAI------DGQRFVAGQDVAGQWWKAFGSPVL 85 GCAVGPD+K+P A++ + + + QRFV QD+ WWK F SP L Sbjct: 20 GCAVGPDYKRPELTPSKAFSPTPLPTATTTAPVSGGNAQRFVLTQDIQADWWKLFRSPQL 79 Query: 86 DSLVDDALAHNADLQAAQAALRAARETAASQSGSLLPSVDLHFMPTRQKVA--------- 136 ++L++ A A N +++AQAALR A+E +Q G P+V + + P R K+A Sbjct: 80 NALIEKAFAANPTIESAQAALRVAQENVYAQQGFFFPTVSVGYTPARTKIAGNLGGNSPG 139 Query: 137 --------DTLASPLA--------DNSYIYNLHTAQLNIAYSPDIFGGTRRQIEAGRAQA 180 T+A+P A + IYN HT QL + ++PD+FG RRQ+E AQA Sbjct: 140 VQGNGTVISTVANPSAAEGGKAPFNAPVIYNFHTTQLTVGFTPDVFGANRRQVETLEAQA 199 Query: 181 EVQRFQRNATYLTLISNVVLAVVNEAALREQLQAAEKAEALATQQLELVRQQRALGALGL 240 + Q+ Q A Y+TL SNV A + EA LREQ+ + A + +E+V +Q G Sbjct: 200 KYQQLQLEAAYITLASNVTAAAIQEALLREQISIVQSIIASNEKSVEIVERQFKAGYASR 259 Query: 241 ADVAAQESLLAQAQAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPL 300 D++ Q++ L QA+ LPPL+KQ Q R+ + L G + L++L+LP +LPL Sbjct: 260 LDLSLQQTTLLQAKEQLPPLQKQFEQTRNLLRALAGGMQDSDLPESFDLASLQLPEDLPL 319 Query: 301 SLPSTLVQQRPDVRAAQAQWQAASAQVGVAIANRLPAFNITGTIGSSAQDISKLFTSGPG 360 SLPS L+ QRPDVRAA+ Q AASAQ+GVA+ANRLP F+I GT G +A S++F + Sbjct: 320 SLPSQLIDQRPDVRAAEEQLHAASAQIGVALANRLPQFSIDGTWGGAASKFSQMFWNSGR 379 Query: 361 FWTLGLDLATPIFHGGSLQHQQRSAEAGLEQASAQYRSVVLGAFQNVADTLHAMAADADA 420 F+ L +++ P+ GG L+H+QR+AE +QA+AQY+ V+ AFQNVADTLHA+ ADA+A Sbjct: 380 FFELAANISMPLLDGGVLRHRQRAAEESYKQAAAQYKETVITAFQNVADTLHAIHADAEA 439 Query: 421 LKAAARAEDAAQRSFDAAQAQWKAGLAGYPQVLLAQQNLLTASQSRVQAQAGRLADTVAL 480 LKA+A D A+ + Q Q G ++ A+Q A+ + QA+A RL DT AL Sbjct: 440 LKASAELADTAKTTLTLTQKQHARGYIDRVVLINAEQGYRQAALNVAQARAMRLGDTAAL 499 Query: 481 FQALGGGWWHQ 491 FQALGGGWWH+ Sbjct: 500 FQALGGGWWHR 510 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 192 bits (489), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 234/467 (50%), Gaps = 17/467 (3%) Query: 28 LPLGGCAVGPDFKQPAAPQVSAYTAE-HIEASQAIDGQRFVAGQDVAGQWWKAFGSPVLD 86 L LGGCAVGPD+++P AP A+ E +AS DG+ + G WW+ F L+ Sbjct: 16 LILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGE-------LKGAWWEIFRDAELN 68 Query: 87 SLVDDALAHNADLQAAQAALRAARETAASQSGSLLPSVDLHFMPTRQKVADTLASPLAD- 145 +L + AL + + AQA + AR A + S P + R + + PL + Sbjct: 69 ALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRT--SAERPLTNY 126 Query: 146 ----NSYIYNLHTAQLNIAYSPDIFGGTRRQIEAGRAQAEVQRFQRNATYLTLISNVVLA 201 +S + N A ++Y D+FG RRQ E A A+ + T L L + + Sbjct: 127 NSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRLVLTAELAAD 186 Query: 202 VVNEAALREQLQAAEKAEALATQQLELVRQQRALGALGLADVAAQESLLAQAQAVLPPLR 261 + ++ ++ T+ L+ + + LGA D+ Q+ L A Q L L+ Sbjct: 187 YLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAATQTQLTLLQ 246 Query: 262 KQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPDVRAAQAQWQ 321 Q A+ ++ IA LVG P + L+ P+ +PL+ P+ L+++RPD+ AA+ Sbjct: 247 DQRARYQNAIATLVG-VPAPDFKLPVNLAVTTAPA-IPLTAPAALLERRPDIAAAERAMA 304 Query: 322 AASAQVGVAIANRLPAFNITGTIGSSAQDISKLFTSGPGFWTLGLDLATPIFHGGSLQHQ 381 AA+AQ+GVA + P+ ++G GS A +S LF++ W++G+ IF GG Sbjct: 305 AANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMIFDGGRTSAN 364 Query: 382 QRSAEAGLEQASAQYRSVVLGAFQNVADTLHAMAADADALKAAARAEDAAQRSFDAAQAQ 441 A+AG +QA YR VL A Q V D L++ A A AL +A A D+A RS + + Sbjct: 365 VDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSADRSLGLSTDR 424 Query: 442 WKAGLAGYPQVLLAQQNLLTASQSRVQAQAGRLADTVALFQALGGGW 488 +++G+ +V++AQQ L+ + VQ RL +TV L +ALGGGW Sbjct: 425 YQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGW 471 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 228/461 (49%), Gaps = 16/461 (3%) Query: 30 LGGCAVGPDFKQPAAPQVSAYTAEHIEASQAIDGQRFVAGQDVAGQWWKAFGSPVLDSLV 89 L C++ P + +P AP + Y S+A + Q V D+ W F P L L+ Sbjct: 14 LSACSMAPKYVRPDAPVAADYGV----PSKADNNQ--VRAVDIG--WRNFFTDPRLQVLI 65 Query: 90 DDALAHNADLQAAQAALRAARETAASQSGSLLPSVDLHFMPTRQKVADTLA---SPLADN 146 +A+A+N DL+ A + AR QS LLP+++++ +R +V +++ S + + Sbjct: 66 GNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVVSS 125 Query: 147 SYIYNLHTAQLNIAYSPDIFGGTRRQIEAGRAQAEVQRFQRNATYLTLISNVVLAVVNEA 206 +Y L A A+ D FG R +A A + A ++L+S V A ++E Sbjct: 126 NYQVGLGLA----AFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSER 181 Query: 207 ALREQLQAAEKAEALATQQLELVRQQRALGALGLADVAAQESLLAQAQAVLPPLRKQLAQ 266 + EQ A + + +L +Q+ +GA D+ E+LL A+A ++Q AQ Sbjct: 182 SFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRAQ 241 Query: 267 QRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPDVRAAQAQWQAASAQ 326 + + +LVG+ P P ALS+ + +++P LPS L+ QRPD+R+A+ +A+A Sbjct: 242 AMNALTLLVGQ-PLTDLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANAN 300 Query: 327 VGVAIANRLPAFNITGTIGSSAQDISKLFTSGPGFWTLGLDLATPIFHGGSLQHQQRSAE 386 +G A A P ++T +G+S+ +++ LF G W+ L PIF G + AE Sbjct: 301 IGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLAE 360 Query: 387 AGLEQASAQYRSVVLGAFQNVADTLHAMAADADALKAAARAEDAAQRSFDAAQAQWKAGL 446 + A A Y + AF+ V+D L A ++A ++A F A +++ G+ Sbjct: 361 VRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFATQRFQNGI 420 Query: 447 AGYPQVLLAQQNLLTASQSRVQAQAGRLADTVALFQALGGG 487 A VL AQ+ L TA S VQ + RL + V L+++LGGG Sbjct: 421 ASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGG 461 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 140/468 (29%), Positives = 221/468 (47%), Gaps = 19/468 (4%) Query: 28 LPLGGCAVGPDFKQPAAPQVSAYTAEHIEASQAIDGQ-RFVAGQDVA--GQWWKAFGSPV 84 L L GC+ ++ +AY + + +DG + A D G WWK FG Sbjct: 15 LVLAGCSTARPPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKDRGAWWKVFGDEQ 74 Query: 85 LDSLVDDALAHNADLQAAQAALRAARETAASQSGSLLPSVDLHFMPTRQKVADTLASPLA 144 L +L+ +A N +L A A ++ AR A VD PTR A ++ Sbjct: 75 LSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRSGNAQGASTQ-- 132 Query: 145 DNSYIYNLHTAQLNIAYSPDIFGGTRRQIEAGRAQAEVQRFQRNATYLTLISNVVLAVVN 204 + A L+ AY D+FG A R AE Q + L L S+V Sbjct: 133 --------YRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQSDVAQQYFT 184 Query: 205 EAALREQLQAAEKAEALATQQLELVRQQRALGALGLADVAAQESLLAQAQAVLPPLRKQL 264 +L ++ EK AL + L+L +++ G DVA ++ A A L +++Q Sbjct: 185 IRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAELEGVKRQR 244 Query: 265 AQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPDVRAAQAQWQAAS 324 AQ+ +A+L+G+ P + P L+A + +P LPS L+++RPD+ AQ Q A+S Sbjct: 245 AQRDHALAILLGKAPAEFTLPVAPLAAAVVT--VPSGLPSDLLERRPDIAQAQRQLAASS 302 Query: 325 AQVGVAIANRLPAFNITGTIGSSAQDISKLFTSGPGFWTLG----LDLATPIFHGGSLQH 380 A++G A A P +TG+ G + ++ LF W LG L+ P+F GG Q Sbjct: 303 ARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGTILSMPLFDGGRNQS 362 Query: 381 QQRSAEAGLEQASAQYRSVVLGAFQNVADTLHAMAADADALKAAARAEDAAQRSFDAAQA 440 A+A E A YR VL FQ+V D L A+ L+ +A ++AQ + A Sbjct: 363 NLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAVNSAQLASRLADT 422 Query: 441 QWKAGLAGYPQVLLAQQNLLTASQSRVQAQAGRLADTVALFQALGGGW 488 +++ G A Y +V+ AQ++ L++ +S++++ R +V L +ALGGGW Sbjct: 423 RYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGGGW 470 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 234/478 (48%), Gaps = 37/478 (7%) Query: 23 GLSFGLPLGGCA-----------VGPDFKQPAAPQVSAYTAEHIEASQAIDGQRFVAGQD 71 G S L L GCA V P ++QP A +++A+ G V +D Sbjct: 6 GFSAALLLAGCATQATQQTLVPEVAPQWRQPQA---------NVDAT----GTTSVLTRD 52 Query: 72 VAGQWWKAFGSPVLDSLVDDALAHNADLQAAQAALRAARETAASQSGSLLPSVDLHFMPT 131 WW++FGS LDSL++ + D+ AA A + A+ TA +LLP ++ +F T Sbjct: 53 ----WWRSFGSSELDSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGAT 108 Query: 132 RQKVADTLASPLADNSYIYNLHTAQLNIAYSPDIFGGTRRQIEAGRAQAEVQRFQRNATY 191 R + A + ++ A L+ Y D +G R ++ RA F R+ + Sbjct: 109 RNGRLGGDGNGTATGT----VYQAGLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVH 164 Query: 192 LTLISNVVLAVVNEAALREQLQAAEKAEALATQQLELVRQQRALGALGLADVAAQESLLA 251 LT+ + V + + LRE++ A+ + A A + L+++ + GA ++A Q +LA Sbjct: 165 LTVTAGVASSWLQTVGLRERVAIADLSVASAQRLLDVIESRARAGAANPLELAQQRGVLA 224 Query: 252 QAQAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRP 311 +R+Q +AVL+GR P L+ L+ P+ + LP+ L+ +RP Sbjct: 225 AQMRARAAIRQQAEDSLTTLAVLLGRNPSLLVLAGTELNKLQAPAVVA-GLPADLLVRRP 283 Query: 312 DVRAAQAQWQAASAQVGVAIANRLPAFNITGTIGSSAQDISKLFTSGPGFWTLGLDLATP 371 D+ A+AQ A A + A A LP ++ G I + + +S +F + P ++L LA P Sbjct: 284 DIARAEAQLSGADANIIAARAAMLPRISLGGDITAGSNRVSSVFDN-P-VYSLAAGLAAP 341 Query: 372 IFHGGSLQHQQRSAEAGLEQASAQYRSVVLGAFQNVADTLHAMAADADALKAAARAE-DA 430 IF+ G L + A A E+ A YR ++ AF +V L+A+A DA + A E Sbjct: 342 IFNAGRLAAGRDLALAQREELLANYRRAIVAAFGDVEVALNAVAG-IDAQRIAQEEELRQ 400 Query: 431 AQRSFDAAQAQWKAGLAGYPQVLLAQQNLLTASQSRVQAQAGRLADTVALFQALGGGW 488 AQR+F+ A+++++AG +L AQ+ L A + Q + RL V+L++ALGGGW Sbjct: 401 AQRAFNLAESRYRAGAETSLTLLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGGW 458 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.129 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 815,796 Number of extensions: 26552 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 12 Length of query: 493 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 406 Effective length of database: 899,382 Effective search space: 365149092 Effective search space used: 365149092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)