BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2178.p (573 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 300 1e-82 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 292 4e-80 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 285 4e-78 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 285 5e-78 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 281 6e-77 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 300 bits (769), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 205/446 (45%), Positives = 288/446 (64%), Gaps = 17/446 (3%) Query: 129 LMRQAGFSRAEMDKLMEAKNN-SDALVATET-----RAMQMIKGRYQDQQGGFFRLAEPD 182 LM + +AE+ ++ +A ++ ++ALV E R Q I G Q + F L + Sbjct: 72 LMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAG-LQADRSKFLPLKDDF 130 Query: 183 LEQARTLMHDHAYHLEKARIMRPVD-DFLAMLEARTTYEI-------AQAQQRADRLNVL 234 ++ A + D A L A + RP +LA ++ Y+ A+A +A + +L Sbjct: 131 IKLASAGIKDEAVALLFAEV-RPAQLSYLASIDKLIDYQNELMKKSGAEANAKASQTQLL 189 Query: 235 TYVLAGLVLVVLALSLVSLYRLIAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSS 294 + + + +++ A+ V R I PLSQA +A +VA GDL+G I VE K ETGQLL + Sbjct: 190 IGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDETGQLLQA 249 Query: 295 LQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSST 354 L+ M +GL IV QVR + ++ IA G LDL+ R+EQQASSL++TA++ME+L+ST Sbjct: 250 LKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASSMEELTST 309 Query: 355 VQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQT 414 V+Q+A++ARQ++ LA SA+ AV GGA VS+VV+ M + +A +IVDII VID IAFQT Sbjct: 310 VKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVIDGIAFQT 369 Query: 415 NILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRA 474 NILALNAAVEAARAG +GR FAVVASEVR LAQRSA AA EIK LIG SV + G + Sbjct: 370 NILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVSIGSRLV 429 Query: 475 QVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSA 534 AG TM+EVV V RV+ +++E+ + S +Q+ G+ QI QAV MDQVTQ NA LV+++A Sbjct: 430 DDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAA 489 Query: 535 AAAEAMRLATERMSKLVGAFRLD-HG 559 AAAE+++ +S++VG F+LD HG Sbjct: 490 AAAESLQGQASHLSQVVGVFKLDGHG 515 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 292 bits (747), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 169/321 (52%), Positives = 229/321 (71%), Gaps = 3/321 (0%) Query: 241 LVLVVLALSLVSLYRLIAG---PLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQH 297 L +VLA + +RL G PL A A RVA GDL+ I+ E K E GQLL++L+ Sbjct: 196 LSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKD 255 Query: 298 MRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQQ 357 M GL IV +VR + ++ +IA G LDL+ R+EQQASSL++TA++ME+L+STV+Q Sbjct: 256 MNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQ 315 Query: 358 SAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNIL 417 +A +ARQA+ LA SA+ A+ GG VSQVV+ M+ + ++ +IVDIISVID IAFQTNIL Sbjct: 316 NADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNIL 375 Query: 418 ALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQVA 477 ALNAAVEAARAG +GR FAVVA+EVR LAQRSA AA EIK LIG SV ++ G + A Sbjct: 376 ALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEA 435 Query: 478 GQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAAA 537 G TM E+V+ + RV+ ++ E+ + S +QSAG+ QI QA+ MD VTQ NA LV+++AAAA Sbjct: 436 GATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAA 495 Query: 538 EAMRLATERMSKLVGAFRLDH 558 E+M+ ++ ++VGAF+LD+ Sbjct: 496 ESMQDQARKLGQVVGAFKLDN 516 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 285 bits (730), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 178/336 (52%), Positives = 231/336 (68%), Gaps = 7/336 (2%) Query: 222 AQAQQRADRLNVLTYVLAGLVLVVLALSLVSLYRLIAGPLSQAAQVATRVAQGDLSGVIE 281 A AQQ L+V+ +++ L LA R I PLSQA +A +VA GDL+G I Sbjct: 184 ANAQQLVGILSVIAVIISAF-LGFLA------TRSITRPLSQAVGLARKVADGDLTGTIV 236 Query: 282 VELKGETGQLLSSLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSL 341 V K ETGQLL +LQ M GL IV QVR + ++ IA G LDL+ R+E+QASSL Sbjct: 237 VTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSL 296 Query: 342 QQTAAAMEQLSSTVQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIV 401 ++TA++ME+L+STV+Q+A +ARQ++ LA +A+ AV GGA VSQVVE M + +A +IV Sbjct: 297 EETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIV 356 Query: 402 DIISVIDAIAFQTNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIG 461 DII VID IAFQTNILALNAAVEAARAG +GR FAVVASEVR LAQRSA AA EIK LI Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLID 416 Query: 462 ASVQSIEEGCQRAQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQ 521 SV+ + G + AG TM EVV V RV+ ++ E+ + S +Q+ G+ QI QAV MDQ Sbjct: 417 DSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQ 476 Query: 522 VTQHNAVLVQQSAAAAEAMRLATERMSKLVGAFRLD 557 VTQ NA LV+++AAAAE+++ +S++V F+LD Sbjct: 477 VTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLD 512 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 285 bits (729), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 162/325 (49%), Positives = 228/325 (70%) Query: 237 VLAGLVLVVLALSLVSLYRLIAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQ 296 +LAG+ L++ + R I PL+ A VA RVAQGDLSG + V+ E GQL+++L+ Sbjct: 195 ILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKTTNEVGQLMAALK 254 Query: 297 HMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQ 356 M L HIV QVR + ++G+IA G +DL+ R+EQQASSL++TA+AME+L+STV+ Sbjct: 255 TMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEETASAMEELTSTVR 314 Query: 357 QSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNI 416 ++A +A+QA+ LA SA + A GG+ V +V+ M + ++ +I DI VID+IAFQTNI Sbjct: 315 ENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADITGVIDSIAFQTNI 374 Query: 417 LALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQV 476 LALNAAVEAARAG +GR FAVVASEVR LAQRSA AA EIK LI SV ++ G + Q Sbjct: 375 LALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSVAKVDNGSKLVQQ 434 Query: 477 AGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAA 536 AG T+ EVV+ V +S ++A +++ S +QSAG+ Q+ QA+ +D+ TQ NA LV+QSAAA Sbjct: 435 AGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQQNAALVEQSAAA 494 Query: 537 AEAMRLATERMSKLVGAFRLDHGDV 561 A+++R +++ +LV F+LD V Sbjct: 495 AQSLREQADQLMQLVSIFKLDRQSV 519 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 281 bits (720), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 173/329 (52%), Positives = 232/329 (70%), Gaps = 4/329 (1%) Query: 237 VLAGLVLVVLALSLVSLYRL---IAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLS 293 +L GL+ +AL + +RL I PL++A VA VA GDLS IEV ETGQL+ Sbjct: 191 LLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSNDETGQLMQ 250 Query: 294 SLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSS 353 +L+ M Q L+ V +VR + ++ IA G LDL+ R+E+QASSL +TAA+M QL+S Sbjct: 251 ALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETAASMGQLTS 310 Query: 354 TVQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQ 413 TV+Q+A +ARQA++LA SA+ AV GG+ VS+VV+ M + +A +IVDIISVID IAFQ Sbjct: 311 TVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIISVIDGIAFQ 370 Query: 414 TNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQR 473 TNILALNAAVEAARAG +GR FAVVASEVR LAQRSA AA EIK LIG SV +E G + Sbjct: 371 TNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVGKVEAGSKL 430 Query: 474 AQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQS 533 AG TM E+V V RV+ ++AE+ + S +QS+G+ Q+ QA+ MDQVTQ NA LV+++ Sbjct: 431 VNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQNAALVEEA 490 Query: 534 AAAAEAMRLATERMSKLVGAFRLDHGDVP 562 AAAAE+++ ++++V F+LD G+ P Sbjct: 491 AAAAESLQDQAGNLARVVSQFKLD-GNQP 518 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 798,049 Number of extensions: 24915 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 20 Length of query: 573 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 485 Effective length of database: 895,685 Effective search space: 434407225 Effective search space used: 434407225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)