BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2174.p (433 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 162 3e-41 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 158 6e-40 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 142 4e-35 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 134 1e-32 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 132 4e-32 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 117/404 (28%), Positives = 202/404 (50%), Gaps = 13/404 (3%) Query: 2 STHPHVRGSRAGAVLRVTS-GNFLEQFDFFLFGFYATHI-SKVFFPASSEFASLMLTFAV 59 + +P + +V+ ++ G +E +DF ++G A + +K+FFP + Sbjct: 11 TVNPRAEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGS 70 Query: 60 FGAGFLMRPLGAIILGAYIDEVGRRKGLIVTLSIMASGTILIACVPGYASIGLLAPLLVL 119 + GFL RPLG I G Y D +GR+ L++TL++M GT LI +P Y IG+ AP+L++ Sbjct: 71 YAVGFLARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLI 130 Query: 120 AGRLLQGFSAGAELGGVSVYLAEMATPGRKGFYTAWQSASQQIAIVVAALMGYALNAWLD 179 R++QG G E GG +V + E + R+GFY + + +V+A L+ ++ + + Sbjct: 131 TLRIIQGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLV-FSFVSKMP 189 Query: 180 AAQIAAWGWRIPFFVGCLIVPFIFLLRRSLQETEAFQARAHRPALGE--VYRTMLANWKT 237 A I +WGWRIPF + +++ +R++++E+ F+ R AL + V +L + +T Sbjct: 190 EADILSWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPRT 249 Query: 238 VIAGMLLVAMTTTTFYLITVYTPTFGRAVLKLSTQASLVVTLLVGLSNFCWLPIGGMVSD 297 + L + Y++TV+ + L L L L+ + +P+ G +SD Sbjct: 250 FFIAIGLKISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSD 309 Query: 298 RIGRRPVLLAITVLAILTAYPALSWLAAAPSVERMLLVLLWLSFFFGMYNGAMVAALTEI 357 IGRRP+ + I A+P ++ +L V++ +S M +G M A Sbjct: 310 VIGRRPLYFIGALFTIAFAFPLFLFMEMRTPEAVILTVVVAMS----MGHGLMFAPEATY 365 Query: 358 MPE----QIRVAGFSLAFSLATAVFGGFTPAISTWLIELTGDKA 397 PE +R +G S F +A A+ GG +P I+T L G A Sbjct: 366 FPELFGANVRYSGASFGFQVAAAIGGGLSPIIATALAGYLGGTA 409 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 158 bits (400), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 118/413 (28%), Positives = 204/413 (49%), Gaps = 5/413 (1%) Query: 7 VRGSRAGAVLRVTS-GNFLEQFDFFLFGFYATHI-SKVFFPASSEFASLMLTFAVFGAGF 64 V+ S+ G + +S G +E +DF ++G A + +K+FFP S + + GF Sbjct: 16 VKKSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGF 75 Query: 65 LMRPLGAIILGAYIDEVGRRKGLIVTLSIMASGTILIACVPGYASIGLLAPLLVLAGRLL 124 RPLG I G + D VGR+ L++T+ IM GT+LI C+P Y IG+ AP+L++ R + Sbjct: 76 FARPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFI 135 Query: 125 QGFSAGAELGGVSVYLAEMATPGRKGFYTAWQSASQQIAIVVAALMGYALNAWLDAAQIA 184 QG G E GG ++ + E A R+GFY + + +V+A + +A+ + L A Sbjct: 136 QGVGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGV-FAIVSKLPEADFL 194 Query: 185 AWGWRIPFFVGCLIVPFIFLLRRSLQETEAFQARAHRPALGE--VYRTMLANWKTVIAGM 242 +WGWRIPF + ++V +++R ++E+ F + L + V +L N + + + Sbjct: 195 SWGWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAI 254 Query: 243 LLVAMTTTTFYLITVYTPTFGRAVLKLSTQASLVVTLLVGLSNFCWLPIGGMVSDRIGRR 302 L + Y++TV+ L+L L L L +P+ G++SD++GRR Sbjct: 255 GLKISEVSWVYILTVFIVVHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRR 314 Query: 303 PVLLAITVLAILTAYPALSWLAAAPSVERMLLVLLWLSFFFGMYNGAMVAALTEIMPEQI 362 P+ + + + A+P L S + ++++ LS G E+ + Sbjct: 315 PMYIWGALFTVALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGANV 374 Query: 363 RVAGFSLAFSLATAVFGGFTPAISTWLIELTGDKAAPGLWLTFAALCGLLATL 415 R +G +L F +A A+ GG +P I+T L+ G + L A L+A + Sbjct: 375 RYSGATLGFQVAAAIGGGLSPIIATGLMAYFGGTTGVSVMLILLAAITLVAAI 427 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 142 bits (358), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 103/324 (31%), Positives = 171/324 (52%), Gaps = 15/324 (4%) Query: 21 GNFLEQFDFFLFGFYATHISKVFFPASSEFASLMLTFAVFGAGFLMRPLGAIILGAYIDE 80 G E +DF+L+G A I+K FF + + + F AGF++RP GAI+ G D Sbjct: 25 GTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLAFAAGFIVRPFGAIVFGRLGDM 84 Query: 81 VGRRKGLIVTLSIMASGTILIACVPGYASIGLLAPLLVLAGRLLQGFSAGAELGGVSVYL 140 +GR+ +VT+ IM + T ++ +P YASIG+ AP++++ R+LQG + G E GG + Y+ Sbjct: 85 IGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILIILRILQGLALGGEYGGAATYV 144 Query: 141 AEMATPGRKGFYTAWQSASQQIAIVVAALMGYALNAWLDAAQIAAWGWRIPFFVGCLIVP 200 AE A G++G +T+W + + + ++ L+ + A WGWRIPF V ++ Sbjct: 145 AEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTAMGEEAFADWGWRIPFLVSVFLLG 204 Query: 201 FIFLLRRSLQETEAF-----QARAHRPALGEVYRTMLANWKTVIAGML-LVAMTTTTFYL 254 +R S+ E+ AF + +A + L E + N K VI ++ L A +Y Sbjct: 205 ISVWIRLSMNESPAFLKMKSEGKASKAPLTEAF-AKWGNLKIVILALIGLTAGQAVVWYT 263 Query: 255 ITVYTPTFGRAVLKLSTQASLVV---TLLVGLSNFCWLPIGGMVSDRIGRRPVLLAITVL 311 Y F LK+ + ++ +LL+ F I G +SD+IGR+P+++A ++ Sbjct: 264 GQFYALFFLTQTLKVDGPTANILIAASLLLATPFFV---IFGSLSDKIGRKPIIMAGCLI 320 Query: 312 AILTAYPALSWLA--AAPSVERML 333 A LT +P + L A P++E L Sbjct: 321 AALTYFPIFNALTHYANPALEAAL 344 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 105/376 (27%), Positives = 182/376 (48%), Gaps = 12/376 (3%) Query: 21 GNFLEQFDFFLFGFYATHI-SKVFFPASSEFASLMLTFAVFGAGFLMRPLGAIILGAYID 79 G +E FDF+++ A + +FFP+S+ A ++ + A F F RP+G+ + G Y D Sbjct: 24 GTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIAFFARPVGSAVFGHYGD 83 Query: 80 EVGRRKGLIVTLSIMASGTILIACVPGYASIGLLAPLLVLAGRLLQGFSAGAELGGVSVY 139 +GR+ L+ L M T++I +P Y +IG LAPLL+ R QG G E GG + Sbjct: 84 RIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRFGQGLGLGGEWGGAVLL 143 Query: 140 LAEMATPGRKGFYTAWQSASQQIAIVVAALMGYALNAWLDAAQIAAWGWRIPFFVGCLIV 199 E A PG+ +Y + + ++ + L+ L Q ++GWRIPF ++V Sbjct: 144 ATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQFFSYGWRIPFIASAVLV 203 Query: 200 PFIFLLRRSLQETEAFQA------RAHRPALGEVYRTMLANWKTVIAGMLLVAMTTTTFY 253 +R + ET FQ R P + ++R + + ++ G ++ T FY Sbjct: 204 LVGLYVRLKITETPVFQKVLDKNERVKVP-IATIFR---EHSRVLVLGTIIATATFVLFY 259 Query: 254 LITVYTPTFGRAVLKLSTQASLVVTLLVGLSNFCWLPIGGMVSDRIGRRPVLLAITVLAI 313 L+TV+ ++G L + + L++ L + +PI +++D+ GRR ++ +++ + Sbjct: 260 LMTVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALLADKYGRRITMILVSIAIM 319 Query: 314 LTAYPALSWLAAAPSVERMLLVLLWLSFFFGMYNGAMVAALTEIMPEQIRVAGFSLAFSL 373 L + A ++ + L L+ GM G + L+E+ P +IR G SL F+L Sbjct: 320 LFGFLISPMFVAHDAIGVTFFLSLGLA-LMGMTYGPLGTMLSELFPTEIRYTGVSLTFNL 378 Query: 374 ATAVFGGFTPAISTWL 389 V P +TWL Sbjct: 379 GGIVGASLAPYAATWL 394 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 161/322 (50%), Gaps = 15/322 (4%) Query: 15 VLRVTSGNFLEQFDFFLFGFYATHISKVFFPASSEFASLMLTFAVFGAGFLMRPLGAIIL 74 VL T G E +DFF++G A +S V FP + A+L+ + AGF++RP+GA++ Sbjct: 23 VLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLASLGALAAGFVIRPIGAVLF 82 Query: 75 GAYIDEVGRRKGLIVTLSIMASGTILIACVPGYASIGLLAPLLVLAGRLLQGFSAGAELG 134 G D +GR+ ++T+ +M T LI +P YAS+G A + ++ RL+QG + G E G Sbjct: 83 GYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQGLAVGGEYG 142 Query: 135 GVSVYLAEMATPGRKGFYTAWQSASQQIAIVVAALMGYALNAWLDAAQIAAWGWRIPFFV 194 G +Y+AE + P R+G T W + + ++++ + A +D A WGWR+PF + Sbjct: 143 GAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDMASFKEWGWRVPFII 202 Query: 195 GCLIVPFIFLLRRSLQETEAF-QARAHRPALGEVYRTMLANWKTVIAGMLLVAM------ 247 ++ F +R L E+ F + +A R W ++ M+L+A+ Sbjct: 203 SIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKWPSL--KMILLALFGVTAG 260 Query: 248 TTTTFYLITVYTPTFGRAVLKLSTQAS---LVVTLLVGLSNFCWLPIGGMVSDRIGRRPV 304 T++ Y F + + L + + + L+G F + G +SDR+GR+ + Sbjct: 261 QGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFLIGAPAFVFF---GWLSDRLGRKWI 317 Query: 305 LLAITVLAILTAYPALSWLAAA 326 ++A +A L P + L A Sbjct: 318 MMAGLFIAALCYRPMFASLLEA 339 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 871,497 Number of extensions: 31250 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 8 Length of query: 433 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 347 Effective length of database: 903,079 Effective search space: 313368413 Effective search space used: 313368413 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)