BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2171.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 100 1e-22 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 80 2e-16 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 77 2e-15 gi|152982152|ref|YP_001355350.1| LysR family transcriptional reg... 72 4e-14 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 72 4e-14 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 13/258 (5%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDA 60 +E+RQLR+F ++ E G+AAL L M LSQ I LE L +L +RTS V T A Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GIAFLKQAQLALRHLDDAALAARQAR----LSGHVSVGLASSTAGVMGLAFMSAMRERYP 116 GIA L +AQ L+ AAL R SG +S+ S+ + F+ RE YP Sbjct: 63 GIALLPEAQRILQQ--TAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYP 120 Query: 117 DVRLRMVESLSGHLGAMLGARQIDLAILFQEEPAQ---RWSVLPLLDERLFVIGAQGLPG 173 V + + E+ + L +ID+ +L P + + LP+L E L + +GL Sbjct: 121 QVEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKA 180 Query: 174 LPGGRQARLGKLGELPLILPTRK--HGLRSLLDAAFHHAGYSPHIVMEVDGLPMLMDAVR 231 + G + L + ELPLI+ R+ + A + AG +PHI E + ++ V Sbjct: 181 VRGKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVS 240 Query: 232 AGIGATIQPGAA--LARP 247 AG+G + P + L RP Sbjct: 241 AGMGIALVPQSVSNLKRP 258 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 5/260 (1%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDA 60 ME+R LRYF + + S +A+ L + LS QI ++E+EL +L R V T A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GIAFLKQAQLALRHLDDA--ALAARQARLSGHVSVGLASSTAGVMGLAFMSAMRERYPDV 118 G F A+ AL +D AL + G V+ G+ SS ++ + YP + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 119 RLRMVESLSGHLGAMLGARQIDLAILFQEEPAQRWSVLPLLDERLFVIGAQGLPGLPGGR 178 ++ ++ SG + L + + + ++ +V PL L ++ P L G Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHP-LVGSA 179 Query: 179 QARLGKLGELPLILPTRKHGLRSLLDAAFHHAGYSPHIVMEVDGLPMLMDAVRAGIGATI 238 L +L E L++ + ++ R ++DA G +P IVME++ + ++ VR ATI Sbjct: 180 GITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLATI 239 Query: 239 QPGAALARPENAGLKSVPIA 258 + E GL VP+ Sbjct: 240 LSANLV--DEMPGLHQVPLT 257 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 118/256 (46%), Gaps = 22/256 (8%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDA 60 +++R LRYF + E G + KAA +G+ LSQQI LE EL L +R G+ T++ Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GIAFLKQAQLALRHLDDAALAARQARL--SGHVSVGLASSTAGVMGL-AFMSAMRERYPD 117 G A L A+L L ++ R+ L SG ++VG S A + A + A R++ P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 118 VRLRMVESLSGHLGAMLGARQIDLAILFQEEP---AQRWSVLPLLDERLFVI------GA 168 V + + ES + L L ++D+A F P A + +L E + V A Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVA--FIRSPIGSAAGLKMETMLVEEMIVALPITHRLA 181 Query: 169 QGLPGLPGGRQARLGKLGELPLILPTRKH--GLRSLLDAAFHHAGYSPHIVMEVDGLPML 226 Q LP L L E IL R GL + AA AG+SP +V E Sbjct: 182 QRRKSLP------LTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLST 235 Query: 227 MDAVRAGIGATIQPGA 242 + V AG+G +I P + Sbjct: 236 LSLVAAGLGVSIVPAS 251 >gi|152982152|ref|YP_001355350.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 312 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 21/304 (6%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTS--TGVIPT 58 M +RQL Y ++ +AA + ALS + LE EL ++QR G P Sbjct: 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGIAIVQRGQRFQGFTPE 60 Query: 59 DAGI-AFLKQAQLALRHLDDAALAARQARLSGHVSVGLASSTAGVMGLAFMSAMRERYPD 117 I + +Q AL L A +R +L+G + +G +T ++ L R ++ D Sbjct: 61 GERILDWARQTLAALEGLKQEASMSR-VKLTGTLRLGAIPTTMPIVSL-LTGQCRAQHAD 118 Query: 118 VRLRMVESLSGH-LGAMLGARQIDLAILFQEEPAQR---WSVLPLLDERLFVIGAQGLPG 173 +R ++V SLS + L ++D+ + + E+ QR + V PL ER ++ +G Sbjct: 119 LR-QLVLSLSTEEIMRRLDDFELDVGLTYLED--QRLNGFHVQPLYRERYMLLAREG-AM 174 Query: 174 LPGGRQARLGKLGELPLILPTRKHGLRSLLDAAFHHAGYSPHIVMEVDGLPMLMDAVRAG 233 L G + + E PL L T R ++DAAF A P++V+E D + L VR Sbjct: 175 LDGKAEISWEEAAEFPLCLLTSHMQNRRIVDAAFRRAEVHPNVVVETDSVFALYSHVRHA 234 Query: 234 IGATIQPGAALA----RPENAGLKSVPIAGSDATRPNLIVSVSDDELSPAGLAARVLLAE 289 ++ P + L R E + VP + +R ++S+ D SP +AAR + + Sbjct: 235 NLYSVVPHSLLCLFELRDEMVAIPIVP----ELSRSIGLISLDHDPCSPIVVAARSIAEK 290 Query: 290 VARQ 293 + Q Sbjct: 291 INLQ 294 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 3/282 (1%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDA 60 + +RQLR F ++ E AA L + SALS I LE EL +L R + V T+ Sbjct: 3 LTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLTEH 62 Query: 61 GIAFLKQAQLALRHLDDAALAARQA--RLSGHVSVGLASSTAGVMGLAFMSAMRERYPDV 118 G FL A+ L L+ A + +R++ G V+V ++ A + FM +R+P + Sbjct: 63 GEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHPGI 122 Query: 119 RLRMVESLSGHLGAMLGARQIDLAILFQEEPAQRWSVLPLLDERLFVIGAQGLPGLPGGR 178 +L + + + L +D ++ Q P S LP+ + ++ +G P L Sbjct: 123 KLMLRDVAEESIKKRLLNGDVDFSVGTQLNPESEISELPIFSDHFVLLMPKGHP-LTKQT 181 Query: 179 QARLGKLGELPLILPTRKHGLRSLLDAAFHHAGYSPHIVMEVDGLPMLMDAVRAGIGATI 238 + L + + P+I +R++L+A + +I E ++ VR G+G TI Sbjct: 182 RIPLQAISQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRNGMGITI 241 Query: 239 QPGAALARPENAGLKSVPIAGSDATRPNLIVSVSDDELSPAG 280 P A G+ S+ TR + + LSPA Sbjct: 242 LPANAHQLTSTQGIVVRNFGKSNFTRTVCTFQLRNRSLSPAA 283 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 659,446 Number of extensions: 26207 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 14 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)