BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2170.p (436 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 95 9e-21 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 86 4e-18 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 73 3e-14 gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 69 4e-13 gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg... 59 5e-10 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 94.7 bits (234), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 16/304 (5%) Query: 129 IDERRVLVCPGAQAALAALLLSQTQPGEVILAEPLTYPGLLTAAAQLGRRVVAVGVDGEG 188 I +VL+ G+Q AL L + +L E +Y G L A + + V+V D G Sbjct: 97 ITPDQVLMVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYG 156 Query: 189 MRPDLLQTMARKHGARLVYLNPTLQNPTTHTMPAARRAEIAAVVTRLNLRVIEDDPYWRF 248 + P+ + +A GARL+Y P NPT TM RR + R L +IEDDPY Sbjct: 157 LLPEAVDGIA--DGARLLYALPNFHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGAL 214 Query: 249 AAHA---PKPLAHYAPQHVFYVSTLSKCLLPGLRTAYVVTPEGVGQEELLGALRSFVLMS 305 + A PK L P V Y+ + SK L PG+R YVV P + + +L A ++ L + Sbjct: 215 SYRAEPLPKMLTM-NPSGVIYMGSFSKVLTPGIRLGYVVGPTPLIR-KLEQAKQAADLHT 272 Query: 306 TPLMTALSTQWIHDGTADKLLEGIRHEARTRQELALRTLGDADLAGA------GGIHLWK 359 + L + + I DG + + IR + ++ L L + G GG+ +W Sbjct: 273 SQLTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWV 332 Query: 360 ALPGHWNGPDFVLKARQAGLNLVAHDSFQVGQTDPRQDRTAYIRISLGRSRSGFELVNAL 419 LP H + + +A + V F + + R +++ + + R G V+ L Sbjct: 333 TLPKHIDCMQLLEEAIAQKVAFVPGAPFYANEPEKNTLRLSFVTVPPEKIREG---VSKL 389 Query: 420 RRLM 423 +L+ Sbjct: 390 AKLI 393 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 108/428 (25%), Positives = 166/428 (38%), Gaps = 57/428 (13%) Query: 1 MEQAISDERLKPGDRLPPQRLLADHLGVDLTTVTRAYTEARRRHLLEARGSAGTFVAAPK 60 + Q+I D L+ GDRLP R + V +TV +AY R L+ AR +G +VA Sbjct: 11 LAQSIQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERSGYYVAGAA 70 Query: 61 VDL-------------SQVIDLSMNIP------------------PPPAGVDLDDLLR-- 87 L S +D+S + P P + L R Sbjct: 71 QKLPPEPEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSAFPSPLLFPMARLARAM 130 Query: 88 -QGVSQILIHSDADLLMTYHLGGGSSADRAAGAMWLQELLGHIDERRVLVCPGAQAALAA 146 V Q+ S D L G R +L + L HI +++ GA AL Sbjct: 131 ASSVQQLDPWSAVDDLTP----GNPQLRRQIALRYLADGL-HIHTDEIVITNGALDALNL 185 Query: 147 LLLSQTQPGEVILAEPLTYPGLLTAAAQLGRRVVAVGVDG-EGMRPDLLQTMARKHGARL 205 L + T+PG+ +L E T+ L A + G + V EG+ L +H + Sbjct: 186 CLAAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLAALARAIERHQPKA 245 Query: 206 VYLNPTLQNPTTHTMPAARRAEIAAVVTRLNLRVIEDDPYWR--FAAHAPKPLAHYAPQH 263 +L T QNP MP ++ ++ ++ + + +IEDD Y F P P + + Sbjct: 246 CWLMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRPMPAKAFDSKG 305 Query: 264 -VFYVSTLSKCLLPGLRTAYVVT---PEGVGQEELLGALRSFVLMSTPLMTALSTQWIHD 319 V + S+ SKCL PG R + V + +L L + L T ++ Sbjct: 306 LVMHCSSFSKCLAPGYRVGWAAPGRFTRAVARRKLTTTLAASAPAQAALAT-----YLEK 360 Query: 320 GTADKLLEGIRHEARTRQELALRTLGDADLAGA------GGIHLWKALPGHWNGPDFVLK 373 G DK L +RH +Q + + + AG GG LW LP N + + Sbjct: 361 GGYDKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATRPKGGYFLWLELPAKVNALELHRQ 420 Query: 374 ARQAGLNL 381 A G++L Sbjct: 421 ALAQGISL 428 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 91/421 (21%), Positives = 162/421 (38%), Gaps = 41/421 (9%) Query: 1 MEQAISDERLKPGDRLPPQRLLADHLGVDLTTVTRAYTEARRRHLLEARGSAGTFVAAPK 60 +E+ I + +PG+RLP R + H + +TTV A+ + ++E+ +G FV P Sbjct: 11 IEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQSGYFVRVPP 70 Query: 61 VDLSQVIDLSMNIPPP---PAGVDLDDLLRQGVSQILI--------HSDADLLMTYHLGG 109 + + + P + VD+ L+ + I + D L + + Sbjct: 71 QSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVPLGSPYPDPSLFPSEKINR 130 Query: 110 GSSADRAAGAMW-LQELL--GH-----------------IDERRVLVCPGAQAALAALLL 149 + W + + L GH ID ++V GA A+ L Sbjct: 131 YAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGSAIDPNEIVVTVGATEAINLCLQ 190 Query: 150 SQTQPGEVILAEPLTYPGLLTAAAQLGRRVVAVGVDG-EGMRPDLLQTMARKHGARLVYL 208 + + G+++ E T+ +L A ++G R + V EG+ L+ + +H + Sbjct: 191 AVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLAALEAILDQHQIAACMV 250 Query: 209 NPTLQNPTTHTMPAARRAEIAAVVTRLNLRVIEDDPY--WRFAAHAPKPLAHYAPQH-VF 265 P QNP MP ++ + ++TR + VIE+D Y F P L Y + V Sbjct: 251 MPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNELYFGDVHPTSLKSYDTEGLVL 310 Query: 266 YVSTLSKCLLPGLRTAYVVTPEGVGQEELLGALRSFVLMSTPLMTALSTQWIHDGTADKL 325 + ++ SK L R + + Q E L L + + P + A++ HDG L Sbjct: 311 HCASFSKSLTSAYRIGWAMPGRYRDQVEKLKFLNTLTTPTIPQL-AIAEYLEHDGYEHHL 369 Query: 326 --LEGIRHEARTRQELALRTL---GDADLAGAGGIHLWKALPGHWNGPDFVLKARQAGLN 380 + + + A++ G GG LW LP + A Q G+ Sbjct: 370 RHIRKVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVELPPQVDSMKLYELALQQGIT 429 Query: 381 L 381 + Sbjct: 430 I 430 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 152/370 (41%), Gaps = 47/370 (12%) Query: 5 ISDERLKPGDRLPPQRLLADHLGVDLTTVTRAYTEARRRHLLEARGSAGTFV-------- 56 I D+ L+ G R+P R +D V TV AY LLE+R +G +V Sbjct: 42 IDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRGSGFYVRDRAPMLT 101 Query: 57 ---------AAPKVDLSQVI-DLSMNIPP---PPAGVD----LDDLLRQGVSQILIHSDA 99 A VD+ ++ ++ +PP P G+ LD L + + + Sbjct: 102 PRAQGLQSAAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDGDLVANALRAVSRQNP 161 Query: 100 DLLMTYHLGGGSSADRAAGAMWLQELLGHIDERRVLVCPGAQAALAALLLSQTQPGEVIL 159 +LL+ Y + G R + + EL + + G L + QPG+ I Sbjct: 162 NLLLQYGIPQGFLPLRQQLQLKMAELEISATPDQFVTTAGVTQGLDLVARHYIQPGDTIF 221 Query: 160 AEPLTYPGLLTAAAQLGRRVVAVGVDGEGMRPDLLQ--TMARKHGARLVYLNPTLQNPTT 217 + + + + A LG +VV + +G PD+ Q +A H +L +N L NPT+ Sbjct: 222 VDDPGWFLMFGSFAALGAKVVGIPRLPDG--PDIAQLTALAELHRPKLFIINSILHNPTS 279 Query: 218 HTMPAARRAEIAAVVTRLNLRVIEDDPYWRF----AAHAPKPLAHYAP-QHVFYVSTLSK 272 ++ AA+ ++ + + + ++EDD Y A A +A V Y+ SK Sbjct: 280 TSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQLNRVIYLGGFSK 339 Query: 273 CLLPGLRTAYVVTPEGVGQEELLGALRSFVLMSTPLMTALSTQWIHDGTADKLL-EG--I 329 L LR ++ T + ++ L ++TAL+T I + ++L EG Sbjct: 340 TLAANLRVGFIATSPEIARQ----------LADRKMLTALTTTEITERVVYRILSEGHYR 389 Query: 330 RHEARTRQEL 339 +H R R +L Sbjct: 390 KHTDRLRTKL 399 >gi|152981038|ref|YP_001353695.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 502 Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 7/160 (4%) Query: 133 RVLVCPGAQAALAALLLSQTQPGEVILAEPLTYPGLLTAAAQLGRRVVAVGVDGEGMRPD 192 RVLV +Q AL GE I E Y G A G V V +D +G+R + Sbjct: 197 RVLVLTSSQQALTLCATVLLDAGERIFIEDPVYHGARKAFDAAGLECVPVPLDADGLRVE 256 Query: 193 LLQTMAR--KHGARLVYLNPTLQNPTTHTMPAARRAEIAAVVTRLNLRVIEDDPYWRFAA 250 + +A+ R V+L P+ Q PT T+ RR + + +IEDD F Sbjct: 257 RMLELAQTTDQVPRAVFLTPSHQFPTGATLALDRRLAVIEWARQQQGWIIEDDYDSEF-H 315 Query: 251 HAPKPLAHYAP----QHVFYVSTLSKCLLPGLRTAYVVTP 286 + KP A + Y+ T +K L PGLR Y+V P Sbjct: 316 YDGKPTACVQGLDQYERTIYIGTFTKSLFPGLRIGYMVLP 355 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 975,697 Number of extensions: 38493 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 6 Length of query: 436 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 350 Effective length of database: 903,079 Effective search space: 316077650 Effective search space used: 316077650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)