BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2168.p
         (213 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg...    64   5e-12
gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg...    58   6e-10

>gi|152981662|ref|YP_001352127.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 251

 Score = 64.3 bits (155), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 6   MEHPSTVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLT 65
           ME     + + E L+  II G +  G  L +  V +    S  P+REA + L +EGL+  
Sbjct: 20  MERQRLHDAVVEHLQRLIIEGVLTPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDI 79

Query: 66  LPRRGVRVTMVDRAAVKENAEMRGALEILALRHSVRKFTSEHIAQ---LEQAQQACAQAA 122
           +P RG  V+ ++   + E  EM   LE L+   +  + +   IA    L QA   C    
Sbjct: 80  VPNRGAFVSKMNDTEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAMLVCRAQN 139

Query: 123 SLVEWDAANNLFHDILSSQCAMPRLLAVLKQLQLTNSRYL----FSTGFKRGWQPRSDHD 178
            L  + + N   H+ ++         ++L+Q+ L+ +R L    F + FK     R+ ++
Sbjct: 140 DLPGYYSRNQTIHNKINEAARN----SMLRQIYLSVNRRLLALRFKSNFKEEKWDRAINE 195

Query: 179 HMLIIDALKDKKTDRAVQLLSMHI 202
           H  +I AL+ +   R   +L  H+
Sbjct: 196 HDEMIQALEARDGKRLAGILRQHL 219


>gi|152980771|ref|YP_001354254.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 13  ERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVR 72
           E + E +   I  G +  G  L +  +A+ F  S  P+REA  QL + G+V+  PRRG  
Sbjct: 16  ETLREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVIRPRRGAI 75

Query: 73  VTMVDRAAVKENAEMRGALEILALRHSVRKFTSEHIAQLEQAQQACAQAASLVEWDA--- 129
           V  +    + E  E+   LE +  R + R+ +    A L     AC QA    + DA   
Sbjct: 76  VAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAEHAILMATHLACKQARDDADSDAYFY 135

Query: 130 ANNLFHD---------ILSSQC-AMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDH 179
            N  FH           L  Q  A+ R L   ++LQL   R   +  F          +H
Sbjct: 136 KNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQL-RVRNRVTASFD---------EH 185

Query: 180 MLIIDALKDKKTDRAVQLLSMHI 202
             ++DA+ + K D A +LL  HI
Sbjct: 186 GAVVDAIIEGKGDLAAELLRQHI 208


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 406,124
Number of extensions: 13221
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 134
Effective length of database: 928,958
Effective search space: 124480372
Effective search space used: 124480372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)