BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2165.p
         (386 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980090|ref|YP_001351811.1| 8-amino-7-oxononanoate synthase...   345   3e-96

>gi|152980090|ref|YP_001351811.1| 8-amino-7-oxononanoate synthase
           [Janthinobacterium sp. Marseille]
          Length = 394

 Score =  345 bits (885), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/382 (53%), Positives = 259/382 (67%), Gaps = 6/382 (1%)

Query: 8   LATLASQSLLRTRRVVDGPQGPLLRVEGQDLLSFCSNDYLGLANHPEIVAAAMTALQQYG 67
           LA L +QSL R RR  + P  P ++V+G+ +L+FCSNDYLGLA HP I+ A       YG
Sbjct: 12  LAQLDAQSLRRRRRTTESPCAPRVQVDGRAMLAFCSNDYLGLAAHPRIIDALQQGASLYG 71

Query: 68  MGAAASALISGHSAAYETLEAELAAFVGLPAA----LCFSNGYMANLGVIGALVGAGDTV 123
            G+ AS LISGHS A+  LE  LA FV    A    L F  GYMAN+ ++ AL G+G  +
Sbjct: 72  AGSGASHLISGHSRAHAELEERLAEFVAPQIADARALYFCTGYMANIAILSALSGSGADL 131

Query: 124 IVDRLSHASLIDGARLSGASLKVFPHNDTARLEQVLARCPAGRKLVATDAVFSMDGDLAP 183
             + L+HASLIDGARLS A+++V+PH D  +L  +LA   A  K+V TD+VFSMDGDLA 
Sbjct: 132 FSESLNHASLIDGARLSRANVQVYPHGDLDKLAILLAASTADNKMVVTDSVFSMDGDLAA 191

Query: 184 LAELAAVCARHDAWLLVDDAHGLGVLGPQGQGSLALAQVQAPHVIYMGTLGKAAGVAGAF 243
           L +L A+C +H AWL+VDDAHG GVLG  G+G L    +++P+++YMGTLGKAAGVAGAF
Sbjct: 192 LPQLLALCEQHGAWLVVDDAHGFGVLGEHGRGVLEHFALRSPNLVYMGTLGKAAGVAGAF 251

Query: 244 VAGQRDVLAWIMQRARTYMFTTAHPPALAAATSASLGLI--AKEDWRRQRLHSLAAQLRQ 301
           VA  + V+ W++QRAR Y++TTA PPA+A A   SL +I  A+   RR  L +L AQ R 
Sbjct: 252 VAAHKSVIEWMVQRARPYIYTTAAPPAVAHALLTSLEIIGGAEGAERRAHLQTLIAQWRS 311

Query: 302 GLAGLPWTLLPSSTAIQPLIVGDNAAARALAAALRARGLWVPAICPPTVPKATARLRISL 361
            L    W  L S TAIQP+++G N  A  +AAAL  + +WVPAI PPTVP  TARLR++L
Sbjct: 312 ALQLQRWRALASDTAIQPVVIGANDVAMKIAAALYEQNIWVPAIRPPTVPAGTARLRVTL 371

Query: 362 SAAHTPEQVAQLVAALTALAPE 383
           SAAHT EQV QLV AL  L  +
Sbjct: 372 SAAHTAEQVTQLVGALQQLEQQ 393


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 741,533
Number of extensions: 27078
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 301
Effective length of database: 906,776
Effective search space: 272939576
Effective search space used: 272939576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)