BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2163.p
         (227 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980701|ref|YP_001351812.1| dithiobiotin synthetase [Janthi...   182   2e-47

>gi|152980701|ref|YP_001351812.1| dithiobiotin synthetase
           [Janthinobacterium sp. Marseille]
          Length = 236

 Score =  182 bits (461), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/204 (49%), Positives = 138/204 (67%), Gaps = 3/204 (1%)

Query: 7   FVTGTDTGVGKTLVASALVHLHAARGVRAAGMKPVASGA--FLHPDGQ-WCNDDVQALQA 63
           FVTGTDT +GKT++++AL+H    +GV+AA +K VA+GA      +G+ W NDD  AL  
Sbjct: 8   FVTGTDTEIGKTMISTALLHALVQQGVKAAAIKSVAAGATAIQTNEGEVWHNDDADALAQ 67

Query: 64  AASVALPPHLVNPYLLRQATAPHIAARAEGVRIELEHLVQCHAQLLALCDVLIVEGAGGF 123
           AA+V LP  L  PYLL +A APH++A  +GV I++ H+  C+ Q+  + + ++VEG GGF
Sbjct: 68  AANVVLPRELATPYLLHEACAPHVSAELQGVAIDIAHIKNCYVQVREMAEAVVVEGVGGF 127

Query: 124 MVPLDERYHSDDLVARLDLPVVLVVGIRLGCINHALLTQQAIRWRGLRLAGWVANRIDAE 183
            VPL +   + DL   L LPV++VVG+RLGC+NHALLT  AI  RGL+L GWVAN +DA 
Sbjct: 128 RVPLSDHADTADLARELALPVIMVVGLRLGCLNHALLTADAIAARGLKLVGWVANTVDAG 187

Query: 184 EDQADAMIDTLVQRLQAPLLGRLP 207
              A+  +  L  RL APLLG +P
Sbjct: 188 MPFAEDNVAALAARLSAPLLGCVP 211


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 498,161
Number of extensions: 18948
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 147
Effective length of database: 925,261
Effective search space: 136013367
Effective search space used: 136013367
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)