BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2162.p (546 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 98 1e-21 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 96 5e-21 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 91 2e-19 gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 90 5e-19 gi|152982047|ref|YP_001352158.1| signal transduction histidine k... 78 1e-15 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 153/342 (44%), Gaps = 55/342 (16%) Query: 89 QGPETDRSVVAQVRQAVAERREIATELLNYRK---------NGSTFW--NAL-FISPVYD 136 +GP T ++Q + V + R+IA N+ + TFW NA+ I+ V Sbjct: 263 RGPYTQ---ISQRTRCVIDDRQIARWGFNFTDIPDNCERPFHIPTFWERNAMQIIAFVLM 319 Query: 137 QQGELKYFFSSQLDISRRRDAEQ-------ALGQARKMEALGQLTGGIAHDFNNLLQVIT 189 L F Q +R A++ AL ++ ++G+LT I H+ N L I Sbjct: 320 TAVILLLIFGFQWQRKKRLRADEEANRQRTALAHVARLGSVGELTASIVHEINQPLGAIL 379 Query: 190 GYLDIIHLALRSEV-PDLGRVARSADSIRKASGKAAMLTQQLLAFARKQRLEGRTINLNS 248 D + L + PD A AD IR + +A+++ Q+L K+ LE + ++LN Sbjct: 380 ANADAATMMLNQQSHPDHELRAILAD-IRDDNLRASLIIQKLRVLLSKRSLESKPVSLNE 438 Query: 249 LTEGFTDLVQRTLGGDIQVR------TELAPGLWNCRLDPTQMEVALLNVLINARDAMSG 302 + + R+L G++ ++ ELAP L D T ++ L+N+ NA +AM Sbjct: 439 VID-----TSRSLLGNLAIKHHVMMAIELAPDLPMIMGDSTHLQQVLINLASNAMEAMEA 493 Query: 303 ----KGTVRIRTSNEDLSSEERALQAGLKPGLYVCIAVIDNGPGIPPEILPRVMDPFFTT 358 + T+ I+T + S ++ + V D GPGIP ILP + + F+TT Sbjct: 494 VPPAQRTLSIKTEQCNAS--------------HIRLIVADKGPGIPTNILPNIFESFYTT 539 Query: 359 KDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGGTTVAIYFP 400 K E G G+GL++V V G + + GG I FP Sbjct: 540 KPE--GMGMGLAIVQTIVDAHCGLIETFNDPAGGAAFVITFP 579 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 77/120 (64%) Query: 42 AVEMTRMPMIVSDPRKPDNPIIFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAQV 101 A+E + +I+S + P+ I +VN AF +TGY++AE +G++ FL + +++ + ++ Sbjct: 353 AIECSANAVIISSAQVPEFAIEYVNPAFERITGYTAAEAIGRSSSFLLRNDHEQAGLYEI 412 Query: 102 RQAVAERREIATELLNYRKNGSTFWNALFISPVYDQQGELKYFFSSQLDISRRRDAEQAL 161 R A+AE+RE L NYRKNGS FWN L+I+PV D +G+ +F ++ DI+ + E L Sbjct: 413 RAALAEKREGKAVLRNYRKNGSLFWNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTL 472 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%) Query: 42 AVEMTRMPMIVSDPRKPDNPIIFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAQV 101 A+E + +I++ PD P+ +VN AF +TGYS E +G+N FL G + ++ + ++ Sbjct: 396 AIEASANAIIIARAVAPDYPLEYVNPAFTRITGYSPEEALGRNIGFLWGKDWEQPGIEEL 455 Query: 102 RQAVAERREIATELLNYRKNGSTFWNALFISPVYDQQGELKYFFSSQLDISRRRDAEQAL 161 R E+RE L NYRK+G+ FW+ L+I+PV D GE+ +F + DI+ + E L Sbjct: 456 RSIALEKREGHAVLRNYRKDGALFWSDLYIAPVKDDTGEVSHFVVALYDITATKRYESEL 515 Query: 162 GQARKMEALGQL 173 +AL L Sbjct: 516 EFQTNRDALTGL 527 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 157 AEQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEV-PDLGRVARSADS 215 A+Q L A K+ A+G++T G+AH+ NN + V+ G LD++ L + P G + Sbjct: 439 AQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAAKPVQGELQLMDQQ 498 Query: 216 IRKASGKAAMLTQQLLAFARKQRLEG--RTINLNSLTEGFTDLVQRTLGGDIQVRTELAP 273 I + + + +LL FA G T+ ++ + LV+ L Sbjct: 499 IYRIN----TIVTKLLQFASPGEFAGYVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKE 554 Query: 274 GLWNCRLDPTQMEVALLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQAGLKPGLYVC 333 ++ +++ L+N+ NA AM G++ I TS+ + +R V Sbjct: 555 ATLPVSINRGELQQVLINLFTNAIHAMKDGGSLTISTSDWQEADGKRG----------VA 604 Query: 334 IAVIDNGPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGGT 393 I+V D G GI E + + D FFTTK +G GTGLGLS+ Y V + GG++ + S GT Sbjct: 605 ISVADTGSGIRKEDIAHIFDAFFTTKRQG-GTGLGLSISYTLVARYGGTITVRSEEGAGT 663 Query: 394 TVAIYFPA 401 + A Sbjct: 664 EFTVRLLA 671 >gi|152982047|ref|YP_001352158.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 155/367 (42%), Gaps = 39/367 (10%) Query: 62 IIFVNNAFINMTGYSSAEVVGKNCRF-LQGPETDRSVVAQVRQAVA-ERREIATELLNYR 119 + +VN AF M G + E+VG PE Q A E + Sbjct: 319 VTYVNPAFSQMVGMPAEEIVGHLPPMPYWAPEARTEYHRHFSQVAAGTANPQGFETVFQH 378 Query: 120 KNGSTFWNALFISPVYDQQGELKYFFSSQLDISRR-------RDAEQALGQARKMEALGQ 172 +G +F SP+ D G + S LDIS R R E+ L + ++ +G+ Sbjct: 379 SDGRRIPVLIFESPLVDNTGAQTGWMGSILDISDRKRVEDLNRQQEEKLQASARLATMGE 438 Query: 173 LTGGIAHDFNNLLQVITGY----LDIIH--LALRSEVPDLGRVARSADSIRKASGKAAML 226 + +AH+ N L I+ Y L+++ + +EV ++ + + + + + +A + Sbjct: 439 IASTLAHELNQPLAAISSYTTGALNMLERDKSKAAEV-NIDMLTHALEKAQAQAQRAGQI 497 Query: 227 TQQLLAFARKQRLEGRTINLNSLTEGFTDLVQ-RTLGGDIQVRTELAPGLWNCRLDPTQM 285 + + F +K+ + + L + LV+ + + ++ ++ L D + Sbjct: 498 IRSVHTFVKKREPMRTAVTIEELIDNVAPLVELQAQKYFVFIKIDIPDNLPAVLADHVLL 557 Query: 286 EVALLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQAGLK------PGLYVCIAVIDN 339 E LLN+ NA ++M + ++ E+R L+ P + V I+ D Sbjct: 558 EQVLLNLTRNAIESM------------QSIAPEKRVLRIAAAIDESDPPNVVVSIS--DQ 603 Query: 340 GPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGGTTVAIYF 399 G GIPPE+ R+ PFF+TK G G+GLS+ ++ GG++ + GGT Sbjct: 604 GHGIPPEVAERLYSPFFSTK--ADGMGMGLSICRTAIEFHGGTLTHADNPGGGTIFRFSL 661 Query: 400 PATHDQV 406 P ++V Sbjct: 662 PTLQNRV 668 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,285,502 Number of extensions: 54209 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 261 Number of HSP's successfully gapped: 14 Length of query: 546 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 458 Effective length of database: 895,685 Effective search space: 410223730 Effective search space used: 410223730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)