BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2161.p (233 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 194 5e-51 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 192 1e-50 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 164 4e-42 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 156 1e-39 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 145 3e-36 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 194 bits (492), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 102/226 (45%), Positives = 151/226 (66%), Gaps = 6/226 (2%) Query: 1 MSAPLLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSG 60 MSA LL+++ L+A YG++H+L + + + GE+V+L+GRNGAG+STT+K+ MG++ +G Sbjct: 1 MSA-LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMV-AATG 58 Query: 61 TITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAAL 120 TI F G++I L Y+ AR GLG+V E R IF L+V QNL G Q W+ + Sbjct: 59 TIRFKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQ----AKSRWSADDM 114 Query: 121 FELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMI 180 + LFP L H G +SGGEQQML + RTLMG+P ++++DEP+EG+AP +V +A + Sbjct: 115 YRLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFL 174 Query: 181 QQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQA 226 Q+L QRG+S+LL EQ A +S R Y++ G++V GS + +QA Sbjct: 175 QELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQA 220 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 192 bits (489), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 1/222 (0%) Query: 5 LLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITF 64 +LQV LN YG AH L +SL V +G+ ++L+GRNG GK+T LK LMG+L +G ++ Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 65 GGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAALFELF 124 GRDIT+L P+QRA LG+ +VP+ R IF LTV +NL G + ++ELF Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 125 PNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMIQQLK 184 P L M HR GG +SGG+QQ L IAR L+ P +++LDEP+EG+ P I++ + +I L+ Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 185 QRG-MSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQ 225 +RG + ILLCEQ FA ++D +L G +V GS +++ Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMD 222 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 164 bits (416), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 138/226 (61%), Gaps = 1/226 (0%) Query: 5 LLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITF 64 +L++E + YG + +SL+V GE+V L+G NGAGKSTTL+++ GL G+I Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 65 GGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAA-LFEL 123 G ++ +P + G+ PE RR+F +LTV +N+E G ++ A +F+ Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDK 135 Query: 124 FPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMIQQL 183 FP L + G +SGGEQQML IAR LM P +++ DEPS G+AP IVEQ+ ++I+++ Sbjct: 136 FPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREI 195 Query: 184 KQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQQ 229 + G ++L+ EQN + A + DR YLLE G IV GS +++A+ + Sbjct: 196 RSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPE 241 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 156 bits (394), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 139/228 (60%), Gaps = 5/228 (2%) Query: 1 MSAPLLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGG-- 58 M+ +L++ GL +YG + + L+V +GE++ L+G NGAGK+TTLK++ G L Sbjct: 1 MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60 Query: 59 SGTITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETG--RQPMREGAPAWT 116 G I + G+ I L ++ R L VPE R +FT +++ +NL G + ++G A Sbjct: 61 EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADI 120 Query: 117 PAALFELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQM 176 F +FP L + G +SGGEQQML +AR LM +P +LLLDEPS G++P++VE++ Sbjct: 121 DK-WFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKI 179 Query: 177 AAMIQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQV 224 +I+ + +G++ILL EQN A ++RAY++E G + HG +Q+ Sbjct: 180 FEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQM 227 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 134/230 (58%), Gaps = 11/230 (4%) Query: 6 LQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITFG 65 L V+GL Y + ++L D+S++V G++ ++G NGAGKST ++S++GL G I +G Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 66 GRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNL------ETGRQPMREGAPAWTPAA 119 G+++ + G+ +PE R++F +TV +NL E+ +R+ A Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRD-----RLAR 118 Query: 120 LFELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAM 179 ++E+FP L + G MSGGEQ M++I R LM P +L++DEPS G++P+ V++ + Sbjct: 119 VYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKV 178 Query: 180 IQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQQ 229 I+Q+ G+++LL EQN +S Y+L GR++ G+ E + ++ Sbjct: 179 IKQINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDD 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 570,698 Number of extensions: 25231 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 64 Length of query: 233 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 153 Effective length of database: 925,261 Effective search space: 141564933 Effective search space used: 141564933 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)