BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2160.p (256 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 179 1e-46 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 170 8e-44 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 167 5e-43 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 146 1e-36 gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 141 4e-35 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 179 bits (454), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 153/251 (60%), Gaps = 10/251 (3%) Query: 4 LQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLLD 63 L++Q ++ G+ A+D SF +PAG++++LIGPNGAGK+T +NVI+G ++P +G V L Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 64 GHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENV--------QAALLSHRRRLWQLWR 115 GHDI G+ +I + G+ R+FQ ++ F++ TV EN+ Q +L R + R Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 116 PAAHCLRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGM 175 A LR +A LL +G+SA+A L+YG+ + + + +AL+ P++LL+DEP AG+ Sbjct: 130 EEAD-LRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGL 188 Query: 176 AARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQD 235 E + + RR + Q G++VL EH M +V + +D I+VL G++IA G +++ D Sbjct: 189 NPSETEAFKEMVRR-IGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQND 247 Query: 236 ARVREVYFGSG 246 V Y GSG Sbjct: 248 PEVIRAYLGSG 258 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 170 bits (431), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 146/245 (59%), Gaps = 6/245 (2%) Query: 4 LQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLLD 63 L+++ + K FG + S LP GQ LALIGPNGAGKST FN+I+G+ +G +LL+ Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 64 GHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAAL---LSHRRRLWQLWRPAAHC 120 G IAG +I RRG+ R+FQ++ F L+V EN++ A+ L +R WQ Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLN-GLQD 124 Query: 121 LRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGMAARER 180 + Q A +++++G+ + +L+Y + + +E+ + ++ ++LL+DEPTAGM+ E Sbjct: 125 VNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSES 184 Query: 181 QELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQDARVRE 240 + L R++ + G ++L EH MDVVF ADRI VL G++IA ++R + V++ Sbjct: 185 DAAVELIRKISA--GKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQ 242 Query: 241 VYFGS 245 Y G+ Sbjct: 243 AYLGT 247 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 167 bits (424), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 141/251 (56%), Gaps = 12/251 (4%) Query: 3 LLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLL 62 +L + +SK FGG+ AL V+ + GQ+ LIGPNGAGK+T FNVI G + D G+ L Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 63 DGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRPAAHC-- 120 G + ++ + G+ RTFQ F +T LENV H R L+ H Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIG--RHVRTHQGLFGAVFHHKA 123 Query: 121 -------LRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTA 173 +RQ AM LL+ VG++ AER L+YGD +R+E+A AL+ DP+LL +DEP A Sbjct: 124 ARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAA 183 Query: 174 GMAARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVR 233 GM A E+ L L ++ ++ G ++L EH + ++ DRI VL G+ IA+G DV+ Sbjct: 184 GMNATEKLGLRELLVKIKAE-GKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQ 242 Query: 234 QDARVREVYFG 244 +D V E Y G Sbjct: 243 KDPAVIEAYLG 253 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 7/239 (2%) Query: 4 LQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLLD 63 ++V+ I K FG AL+ VS D PAG++ AL+GP+G GK+T +I G +PD G VLLD Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRPAAHCLRQ 123 G D + AR + R VG FQ A F +TV EN+ L R RP+ +++ Sbjct: 63 GEDAS---ARHVRERQVGFVFQHYALFKHMTVFENIAFGL----RVRPAATRPSESQIKE 115 Query: 124 EAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGMAARERQEL 183 + LL+ V + A+R L+ G +R+ LA AL+ +PR+LL+DEP + A+ R+EL Sbjct: 116 KVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 184 MALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQDARVREVY 242 RRL ++ +F H + AD+I+++ +G V G +DV + VY Sbjct: 176 RRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVY 234 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 141 bits (356), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 129/245 (52%), Gaps = 5/245 (2%) Query: 3 LLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLL 62 +L ++ I+ SF G A++ ++ D+ G++ +IGPNGAGK+T +VI G+ RP +G Sbjct: 45 ILYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFF 104 Query: 63 -DGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRPAAHCL 121 D+ L I G+GR FQ F TV EN++ A+ +R L+ Sbjct: 105 GQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLNSEQ 164 Query: 122 RQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGMAARERQ 181 + +L + ++ Q R G+L++G + +E+ M L +P+L+L+DEP AGM+ E Sbjct: 165 IGKIEEILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDEPVAGMSDAETA 224 Query: 182 ELMALTRRLVSQRGLSVLFTEHSMDVVFAFA--DRIIVLARGQVIAQGDAQDVRQDARVR 239 L L + S++ EH M V A D++ VL G V+A+G Q V+ D RV Sbjct: 225 RTAELLNELRGKH--SIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQQVQADERVI 282 Query: 240 EVYFG 244 EVY G Sbjct: 283 EVYLG 287 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 582,183 Number of extensions: 23007 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 62 Length of query: 256 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 175 Effective length of database: 921,564 Effective search space: 161273700 Effective search space used: 161273700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)