BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2159.p (630 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 145 7e-36 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 139 8e-34 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 127 2e-30 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 112 8e-26 gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 109 4e-25 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 145 bits (366), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 101/298 (33%), Positives = 162/298 (54%), Gaps = 21/298 (7%) Query: 10 LLNGLADASAMFLVAAGLSLIFGVTRIVNFAHGSFYMLGLY-----VAYSLVDRLGASAL 64 LL G+ A+ +FLVA+GL LIFGV RI+N A GS Y LG Y +++L L Sbjct: 8 LLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHLF 67 Query: 65 GFWAAVLLSA-LTVAALGALVEVLVLRRIYRAPELFQLLATFALVLVIKDAVLWAWGPED 123 F VLL A + + +G +E L+ R IY PE FQLL TFA++L+ +D + + WG + Sbjct: 68 PF---VLLGAGIVIGLIGIPLERLI-RTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADP 123 Query: 124 LFGPRAPGLAGAVHLLGRRLPQYDLLLIFIGPLVFALLWLLLNRTRWGTLIRAATQDREM 183 P G + G +P Y++++I + + + L +T+ G ++RA ++RE Sbjct: 124 QQLPNVSMTFGTMSAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATAENRET 183 Query: 184 LGALGVNQAWLFTAVFALGCFLAGLGGALQGPRIPANLALDLDTIGNAFVVVVVGGMGSL 243 A+G+N ++ VF LG L +GGAL P A+L + ++ + AF VVV+GG+GS+ Sbjct: 184 SAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSM 243 Query: 244 GGAFAAALLIAEVKALCIALGHVSWFGLDISLSRLTLVVEFLVMAAILVLRPWGLLGK 301 GA AL++ ++AL + ++ + ++ A+L+ +P GL GK Sbjct: 244 KGAAVGALIVGLIRALS-----------AMYYPEAEILAIYAIVLAVLIWKPAGLYGK 290 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 139 bits (349), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 100/349 (28%), Positives = 178/349 (51%), Gaps = 30/349 (8%) Query: 306 VRSSAAQQAPLRQS-----------SRGARLAGLALMLVLLALPLLAGRLPYLPVLMVEI 354 +R+ AP+ SR +AG ++ +L PL + Y L++ Sbjct: 1 MRTDTVHSAPITAPEELEFVAPPGISRVKLIAGGVVVALLAIAPLFVSQ--YYMTLLIPF 58 Query: 355 LIAVLFAASLHFLLGPGGMVSFGHAAYFGLGAYGAALVSLQW-QWPMPLAMLAGALTAMA 413 + + L G GG++SFGHA + +GAY AA + + + +L + + Sbjct: 59 FAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMVAKTGMISFEMMLLTAVVASFI 118 Query: 414 AAVLFGWFCVRLSGVYLAMLTLAFAQIVWAAIFQWDDVTGGSNGLVGLRPS--------- 464 ++ W R +G++ MLTL+F + + + ++ +TGG +G+ RPS Sbjct: 119 ISIPIAWLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITGGDSGMRVPRPSLFGMELDQF 178 Query: 465 ---ELVAAPLAYYYLALGCAALGVYLLRRVIHAPFGLALRAARDAAVRAESLGMDVRALQ 521 + P +YY L L +++ R++ +P+G+ L A+RD A++A LG+ +R+++ Sbjct: 179 DKTAFLGGP--FYYYCLVMVLLLTWVMWRIVRSPYGIHLMASRDNAIKALYLGVKIRSVR 236 Query: 522 WGGFAVAGLFCGLAGVLFAFSKGSISPEVASVGRSVDGLVMVMLGGVQSLLGPLLGAALF 581 F V+ ++ + GV+ + G PE+A S + M +LGG Q LGP+LGA +F Sbjct: 237 AIAFVVSAVYASIGGVILGVNTGLADPELAYWTHSGHLVFMAVLGGYQEFLGPVLGAFVF 296 Query: 582 TWLQDLVARETDYWRALLGGVILLLVLLFPGGLAGAVQRLRWRSDGEGA 630 LQD ++ T YWR LG ++ +LV++ PGG+ GA++ +++S GE A Sbjct: 297 ILLQDELSSLTQYWRFFLGAILAILVVVLPGGIMGAIR--KFKSKGEQA 343 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 6/208 (2%) Query: 8 VQLLNGLADASAMFLVAAGLSLIFGVTRIVNFAHGSFYMLGLYVAYSLVDRLGASALGFW 67 + LLNGL+ +F++++GL+LIF + ++NFAH SFYM+G Y AYS+ ++A+GFW Sbjct: 6 ISLLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSI-----SNAIGFW 60 Query: 68 AAVLLSALTVAALGALVEVLVLRRIYRAPELFQLLATFALVLVIKDAVLWAWGPEDLFGP 127 A++L+ L V LGALVE LR +++ ++ +LL TF L VI + V WG + Sbjct: 61 PALVLAPLAVGLLGALVERFGLRAVHKYGKIPELLFTFGLSYVIVELVQLIWGRVAVPYS 120 Query: 128 RAPGLAGAVH-LLGRRLPQYDLLLIFIGPLVFALLWLLLNRTRWGTLIRAATQDREMLGA 186 P L G++ L P Y ++ + L+ A ++ L RTR G +I+AA +M+ A Sbjct: 121 IPPELQGSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVEA 180 Query: 187 LGVNQAWLFTAVFALGCFLAGLGGALQG 214 LG N +F VFA GC LAGL G + G Sbjct: 181 LGHNVPRVFMWVFAGGCALAGLAGVIGG 208 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 155/299 (51%), Gaps = 32/299 (10%) Query: 9 QLLNGLADASAMFLVAAGLSLIFGVTRIVNFAHGSFYMLGLYVAYSLVDRLGASALGFWA 68 LN L S L+ GL+LIFG+ R+VNFAHG Y LG YVAY +V G + F+ Sbjct: 7 HTLNALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFG---MNFFG 63 Query: 69 AVLLSALTVAALGALVEVLVLRRIYRAPELFQLLATFALVLVIKDAVLWAWG--PEDLFG 126 +++++A+ G +E +LRR +L +++++++A L WG + + Sbjct: 64 SLIVAAIVGFLFGTAIEYFLLRRRDLKAIDEVMLIMIGVMIIMQNAELLMWGGVAKSVPS 123 Query: 127 P--RAPGLAGAVHLLGRRL----PQYDLLLIFIGPLVFALLWLLLNRTRWGTLIRAATQD 180 P + P + GA+ + RL LL+IF +LL+ R+R G +RA QD Sbjct: 124 PFSQEPIVWGAISVSPIRLFVLVTALALLVIF---------YLLIERSRLGLAMRATFQD 174 Query: 181 REMLGALGVNQAWLFTAVFALGCFLAGLGGALQGPRIPANLAL-DLDTIGNAFVVVVVGG 239 ++ +GVN + ++T FALG LA + GAL P + DL ++ AF +V++GG Sbjct: 175 KDAAKIVGVNVSHVYTLTFALGSCLASVAGALLAPVFVVTPTMGDLASL-KAFAIVILGG 233 Query: 240 MGSLGGAFAAALLIAEVKALCIALGHVSWFGLDISLSRLTLVVEFLVMAAILVLRPWGL 298 +G+L GA ++A V+ G++S D + FLV+ A+++ RP GL Sbjct: 234 LGNLPGAALGGFILAIVEEF--GAGYISTAYRD--------ALGFLVILAVMIFRPQGL 282 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 138/278 (49%), Gaps = 11/278 (3%) Query: 350 LMVEILIAVLFAASLHFLLGPGGMVSFGHAAYFGLGAYGAA-----LVSLQWQWPMPLAM 404 L+ ++ ++FA S + LLG GGM+SFGHA Y GLGA+ A + + P+ L Sbjct: 37 LLCQMGTFIIFALSYNMLLGQGGMLSFGHAVYSGLGAFCAIHAINLVAAGNLHIPITLIP 96 Query: 405 LAGALTAMAAAVLFGWFCVRLSGVYLAMLTLAFAQIVWAA-----IFQWDDVTGGSNGLV 459 L G + + LFG+ R SG AM+TL ++V+A F + ++ +V Sbjct: 97 LVGGVAGLFFGALFGYVTTRKSGTTFAMITLGIVELVFACSLMFPGFFGGEGGIFTDRVV 156 Query: 460 GLRPSELVAAP-LAYYYLALGCAALGVYLLRRVIHAPFGLALRAARDAAVRAESLGMDVR 518 G + P + YYL G L + P G + A RD RAE +G D + Sbjct: 157 GEAFFGITYGPQIQVYYLIAGWLLLSTVAMYAFTQTPLGRIINAVRDNPERAEFVGYDPQ 216 Query: 519 ALQWGGFAVAGLFCGLAGVLFAFSKGSISPEVASVGRSVDGLVMVMLGGVQSLLGPLLGA 578 +++ ++ F G++G L A + +S E S RS L+ +GG GP+LGA Sbjct: 217 WVRYLTLMLSAFFAGISGALTAINFEIVSAENVSALRSGMILLFTFIGGTAFFFGPILGA 276 Query: 579 ALFTWLQDLVARETDYWRALLGGVILLLVLLFPGGLAG 616 + +L +++ T+ W+ LG +L+V+L PGG+AG Sbjct: 277 IVGVFLTVVLSNYTNAWQLYLGVFFVLIVMLAPGGIAG 314 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.143 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,001,335 Number of extensions: 30639 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 13 Length of query: 630 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 541 Effective length of database: 891,988 Effective search space: 482565508 Effective search space used: 482565508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)