BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2157.p
         (178 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980766|ref|YP_001354324.1| two-component response regulato...   311   1e-86
gi|152981350|ref|YP_001354553.1| two-components system response ...    59   2e-10
gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(...    56   2e-09

>gi|152980766|ref|YP_001354324.1| two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  311 bits (798), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/179 (86%), Positives = 164/179 (91%), Gaps = 1/179 (0%)

Query: 1   MPAD-RLLLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLG 59
           M AD RLLLIIEDDAAFARTLGRSFERRGYTVLLAAN E A+A L++H+PGYAVVDLKL 
Sbjct: 1   MSADNRLLLIIEDDAAFARTLGRSFERRGYTVLLAANLEAASALLREHNPGYAVVDLKLE 60

Query: 60  GNASGLACVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGH 119
           GN SGLACVQMLH HD  MLIVVLTGFAS+ TAVEAIKLGACQYLAKPSNTDDIEAAFGH
Sbjct: 61  GNTSGLACVQMLHKHDPAMLIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGH 120

Query: 120 VAGVAELELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178
           VAGV E+E+  R+TSIKTLEWERIHEVLV+TDFNISE ARRLGMHRRTLARKLEKQR+K
Sbjct: 121 VAGVVEIEVSNRSTSIKTLEWERIHEVLVETDFNISEAARRLGMHRRTLARKLEKQRIK 179


>gi|152981350|ref|YP_001354553.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 233

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 7   LLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLGGNASGLA 66
           +L+ EDD+  A  L RS  + GY      N  EA + L        ++DL L    SGL 
Sbjct: 3   ILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLP-KMSGLE 61

Query: 67  CVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGVAEL 126
            +Q L A +  + +++LT   SI   V+ + LGA  ++AKP    ++EA    V  +   
Sbjct: 62  VLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEA---RVRALTRR 118

Query: 127 ELPARATSIK--TLEWERIHEVLVDTDFNISETARRLGMHRRTLAR 170
                 T IK   L ++++  +    D  +  +AR LG+    L R
Sbjct: 119 GAGGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQR 164


>gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I)
           [Janthinobacterium sp. Marseille]
          Length = 506

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 7   LLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLGGNASGLA 66
           + I++DD +    L ++  R        +N  +A   LK   P   V D+++ G  SGL 
Sbjct: 4   IWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGE-SGLE 62

Query: 67  CVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGVAE- 125
            +Q + A    + ++++T F+ + +AV A + GA +YLAKP + D       H  G+   
Sbjct: 63  LLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDID-------HAVGLIRR 115

Query: 126 -LELPARATSIKTLEWE 141
            LE   R TS++ +  E
Sbjct: 116 ALEESLRETSVEQVSAE 132


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 404,463
Number of extensions: 15183
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 5
Length of query: 178
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 101
Effective length of database: 936,352
Effective search space: 94571552
Effective search space used: 94571552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)