BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2155.p
         (283 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981316|ref|YP_001354326.1| SurF1 family protein [Janthinob...   270   8e-74

>gi|152981316|ref|YP_001354326.1| SurF1 family protein
           [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  270 bits (690), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 143/270 (52%), Positives = 179/270 (66%), Gaps = 11/270 (4%)

Query: 11  QGKESGTASAVPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLDLIAKVDARVH 70
           Q   S +  A P+ R++  L +L ++A   F    ALGTWQVYRLQWKL LI +V+ RVH
Sbjct: 7   QTSGSVSKEAGPLFRSRTFLAVLAVIALVLFTGLVALGTWQVYRLQWKLALIERVEQRVH 66

Query: 71  AAPTAPPGPQDWPQVSAERDEYKRVDLRGRYLYSKTVAVQASTDLGSGSWLLTPLQMADG 130
           AA T  PGP+ W Q++A  DEY+ V + G YLY ++V VQA T+LG+G W+LTPL+  DG
Sbjct: 67  AAATPAPGPEQWSQINAANDEYRHVSVSGSYLYEQSVKVQAVTELGAGFWVLTPLRTTDG 126

Query: 131 VVVLVNRGFVSTSPIKLAELHLPD-APADQATEVTGLLRMSEQGGGFLRSNDAAQNRWYS 189
            +VL+NRG++        E   P     D+   V+GLLR+SE GGGFLR ND A NRWYS
Sbjct: 127 NIVLINRGYIP-------ERATPSVGTPDEVQTVSGLLRISEPGGGFLRHNDPAANRWYS 179

Query: 190 RDVKAIAQARGLEPGKVAPYFIDADQASA-QADAAVAPDAQKPVGGLTVIAFHNSHLVYA 248
           RDV+AIA    L P  VAPYFIDA+   A  A  A  P   +PVGGLTVI+FHN+HLVYA
Sbjct: 180 RDVQAIATQHKLAP--VAPYFIDAEAGKAVVAKPATDPALAEPVGGLTVISFHNNHLVYA 237

Query: 249 LTWYALALMSLGAGYWVIRDERRWRQRIQD 278
           LTWYALALM  GA +W+ R+ER+ R    D
Sbjct: 238 LTWYALALMVAGAAFWLRREERKVRATSAD 267


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 622,334
Number of extensions: 22325
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 201
Effective length of database: 917,867
Effective search space: 184491267
Effective search space used: 184491267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)