BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2153.p
         (208 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980608|ref|YP_001354328.1| cytochrome o ubiquinol oxidase ...   339   9e-95
gi|152980101|ref|YP_001354839.1| cytochrome c oxidase subunit II...    90   9e-20

>gi|152980608|ref|YP_001354328.1| cytochrome o ubiquinol oxidase
           subunit III [Janthinobacterium sp. Marseille]
          Length = 210

 Score =  339 bits (869), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 164/210 (78%), Positives = 180/210 (85%), Gaps = 2/210 (0%)

Query: 1   MSEAINHTA--DATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYA 58
           MSE   +++   A PS+RY+V+ HHPENGTLLGFW+YLMSDCLIFACLFA YAVLGRNYA
Sbjct: 1   MSEITANSSALSADPSARYYVQEHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYA 60

Query: 59  GGPTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYF 118
           GGPTGAELFDLPLVA NTA LLLSSITYGFAML  Q K+ + T+ WL ITGLLGA F+  
Sbjct: 61  GGPTGAELFDLPLVAANTAFLLLSSITYGFAMLEAQRKRLKATMIWLAITGLLGAAFLAL 120

Query: 119 ELYEFLHLIHEGAGPSRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGR 178
           ELYEF HLIHEGAGP RS FLTSFFALV THGLHVTFGIIWL+ L+FQ+ +HGL   NGR
Sbjct: 121 ELYEFSHLIHEGAGPQRSAFLTSFFALVATHGLHVTFGIIWLITLMFQLKRHGLIPENGR 180

Query: 179 RLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 208
           RLMCLSMFWHFLDV+WIGVFTFVYLMGVLP
Sbjct: 181 RLMCLSMFWHFLDVIWIGVFTFVYLMGVLP 210


>gi|152980101|ref|YP_001354839.1| cytochrome c oxidase subunit III
           [Janthinobacterium sp. Marseille]
          Length = 286

 Score = 90.1 bits (222), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 74  LNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGP 133
           +NTALLLLS +T   +  A++   +  T FWL  T LLGA F+ F++YE++H   E    
Sbjct: 155 INTALLLLSGVTLTISHHAIRENHRGKTAFWLAATILLGAIFMGFQVYEYMHAYSELNLK 214

Query: 134 SRSG-FLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHFLDV 192
             SG + ++FF L G HG HVT G I L V+L+++ K   T  N       + +WHF+DV
Sbjct: 215 LTSGVYGSTFFLLTGFHGFHVTLGAIMLSVVLYRVLKGHFTADNHFAFEGAAWYWHFVDV 274

Query: 193 VWIGVFTFVYLM 204
           VW+G++  VY +
Sbjct: 275 VWLGLYVVVYWL 286


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.145    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 489,055
Number of extensions: 18403
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 129
Effective length of database: 928,958
Effective search space: 119835582
Effective search space used: 119835582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)