BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2152.p (667 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980480|ref|YP_001354329.1| cytochrome o ubiquinol oxidase ... 1159 0.0 gi|152979815|ref|YP_001354841.1| cytochrome c oxidase subunit I ... 410 e-115 >gi|152980480|ref|YP_001354329.1| cytochrome o ubiquinol oxidase subunit I [Janthinobacterium sp. Marseille] Length = 667 Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/667 (84%), Positives = 610/667 (91%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILLGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 M D+ DL KLIFGRLS +AIP+HEPILL TFAMV LGGI VLG +T +RLWG LWRDW T Sbjct: 1 MQDHTDLTKLIFGRLSWDAIPFHEPILLVTFAMVILGGIAVLGGITYFRLWGTLWRDWIT 60 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAISFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHK+IGIMY++L ++ML+RGFADALMMRAQQAI+FGDN GFLPPHHYDQ+FTAHGVIM Sbjct: 61 SIDHKKIGIMYMILGLIMLMRGFADALMMRAQQAIAFGDNPGFLPPHHYDQIFTAHGVIM 120 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGEFARTGW 180 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGA+LVMASLFVGEFA+TGW Sbjct: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGAVLVMASLFVGEFAKTGW 180 Query: 181 LAYPPLSGILYSPDVGVDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTW 240 LAYPPLSGIL SPDVGVDYYIW+LQ+AGVGTLLSG+NL+VTIVKMRAPGM+MMKMPVFTW Sbjct: 181 LAYPPLSGILASPDVGVDYYIWSLQIAGVGTLLSGVNLIVTIVKMRAPGMDMMKMPVFTW 240 Query: 241 TSLCTNVLIIAAFPVLTAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYIL 300 T+LCTNVLI+AAFPVLTAVL ML+LDRV TNFFTND+GGNAMMYVNLIWIWGHPEVYIL Sbjct: 241 TALCTNVLIVAAFPVLTAVLGMLTLDRVLDTNFFTNDLGGNAMMYVNLIWIWGHPEVYIL 300 Query: 301 VLPAFGVFSEIVSTFSGKRLFGYTSMVYASVVITILSYLVWLHHFFTMGSGASVNSFFGI 360 +LP FGVFSE+VSTFS KRLFGYTSMVYA+VVITILSYLVWLHHFFTMGSGASVNSFFGI Sbjct: 301 ILPLFGVFSEVVSTFSAKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGI 360 Query: 361 TTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVL 420 TTMIISIPTGAKIFNWLFTMYRGRIRFE+PM+WTIGFM+TFVIGGMTGVLLAVPPADFVL Sbjct: 361 TTMIISIPTGAKIFNWLFTMYRGRIRFELPMMWTIGFMITFVIGGMTGVLLAVPPADFVL 420 Query: 421 HNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNAFWGKCSFWFWLVGFYLAFMP 480 HNSLFLIAHFHNVIIGGV+FG+FAGIN+WFPKAFG+KL+ FWGKCSFWFW+VGF++AFMP Sbjct: 421 HNSLFLIAHFHNVIIGGVLFGLFAGINYWFPKAFGYKLDVFWGKCSFWFWIVGFWMAFMP 480 Query: 481 LYVLGLMGVTRRMSHFDDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVT 540 LY+LGLMGVTRRMS F DPSLQIWF VAA GA LIALGI S +IQ VS R R +L DVT Sbjct: 481 LYILGLMGVTRRMSQFQDPSLQIWFQVAAFGAVLIALGIASMLIQFYVSFRRRHELRDVT 540 Query: 541 GDPWDARTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGA 600 GDPWD RTLEWSTSSPPP YNFAFTP VHDND WADMKKN Y+RPL F IHMPKNTGA Sbjct: 541 GDPWDGRTLEWSTSSPPPDYNFAFTPKVHDNDTWADMKKNGYKRPLEGFTAIHMPKNTGA 600 Query: 601 GFIIAALAAVLGFTLIWHMWLPAVVIFVAMIAATIIHTFNYNRDYYIPADEVVRVEAERT 660 GFII+A++A +GF LIW MWL A V FV ++A IIHTFNY RDYYIPA+EV R E RT Sbjct: 601 GFIISAISAAIGFCLIWQMWLLAGVSFVVLLAVIIIHTFNYKRDYYIPAEEVARTENLRT 660 Query: 661 RLLNSHV 667 RLL SHV Sbjct: 661 RLLESHV 667 >gi|152979815|ref|YP_001354841.1| cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] Length = 533 Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/517 (43%), Positives = 315/517 (60%), Gaps = 13/517 (2%) Query: 55 WRDWFTSIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAISFGDNAGFLPPHHYDQVFT 114 WR W + +HK IG +Y+ + VMLL G A+++RA+ F + P ++Q+ T Sbjct: 26 WRRWVLATNHKDIGTLYLWFSFVMLLSGGFLAMLIRAEL---FQPGLQLMQPEFFNQLTT 82 Query: 115 AHGVIMIFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFV-G 173 HG++M+F MP G N+++PLQIGA D+AF +NNFSFW+ A+L+ S V G Sbjct: 83 MHGIMMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAAILLAVSFLVPG 142 Query: 174 EFARTGWLAYPPLSGILYSPDVGVDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMM 233 GW Y PLS + G+D I+AL + G +++ IN++VT++ MRAPGM +M Sbjct: 143 GATAAGWTLYAPLSTQM---GPGMDMAIFALHIMGASSIMGSINIIVTVLNMRAPGMTLM 199 Query: 234 KMPVFTWTSLCTNVLIIAAFPVLTAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWG 293 KMP+F WT L T L+IA PVL + M DR FGT+FF GG+ +MY ++ W +G Sbjct: 200 KMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFG 259 Query: 294 HPEVYILVLPAFGVFSEIVSTFSGKRLFGYTSMVYASVVITILSYLVWLHHFFTMGSGAS 353 HPEVYI++LPAFG+ S I+ TF+ K+LFGY SMVYA+ I ILS++VW HH FT G + Sbjct: 260 HPEVYIMILPAFGIVSHIIPTFARKQLFGYASMVYATASIAILSFMVWAHHMFTTGMPVT 319 Query: 354 VNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAV 413 FF TM+I++PTG KIFNW+ TM+RG + FE PML+ IGF+ F +GG TG++LAV Sbjct: 320 AQLFFMYATMLIAVPTGVKIFNWVATMWRGSMTFETPMLFAIGFIFVFTMGGFTGLILAV 379 Query: 414 PPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNAFWGKCSFWFWLVG 473 P D L ++ +++AHFH V++ G +F +FAG +W PK GF N GK FW L+ Sbjct: 380 TPIDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNETRGKIHFWGSLIL 439 Query: 474 FYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWF-VVAAIGAGLIALGIGSFIIQIAVSIRD 532 F + F P++ LGL G+ RR + D P+ F ++A+IG + G+ AV I Sbjct: 440 FNITFFPMHFLGLAGMPRRYA--DYPAQFTDFNMIASIGG--LGFGLMQVYFLFAVVIPS 495 Query: 533 RKKLADVTGDPWD-ARTLEWSTSSPPPAYNFAFTPVV 568 K PWD A LEW+ SP P + F P V Sbjct: 496 IKGGVPAEAKPWDGAEGLEWTVPSPAPFHTFEVPPTV 532 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.331 0.144 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,606,594 Number of extensions: 68659 Number of successful extensions: 244 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 2 Length of query: 667 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 578 Effective length of database: 891,988 Effective search space: 515569064 Effective search space used: 515569064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 133 (55.8 bits)