BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2151.p
         (310 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980328|ref|YP_001354330.1| cytochrome o ubiquinol oxidase ...   446   e-126

>gi|152980328|ref|YP_001354330.1| cytochrome o ubiquinol oxidase
           subunit II [Janthinobacterium sp. Marseille]
          Length = 338

 Score =  446 bits (1147), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 255/301 (84%)

Query: 1   MVSQILRRGLLLLPAILLAGCNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLL 60
           M S I RRGL+LLP  LLAGC+ VV+NPSGDIA QQ +LI++ST LMLLIIVPVI LT+L
Sbjct: 1   MTSLITRRGLMLLPLTLLAGCDWVVLNPSGDIAAQQGQLIVVSTLLMLLIIVPVIALTIL 60

Query: 61  FAWRYRKSNTSAPYEPDWDHSTRLELIIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID 120
           FAWRYRKSNT A Y+PDWDHST+LEL+IWGAPLLIIIALGL+TWI+TH LDPYRPL R+D
Sbjct: 61  FAWRYRKSNTEAKYDPDWDHSTQLELVIWGAPLLIIIALGLITWISTHKLDPYRPLDRLD 120

Query: 121 AERPLAPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIEFKITASNVMNSFY 180
           A RP++   +PL +EVVALDWKWLFIYPEQGIAT+NELA PVDVPI FKITAS VMNSFY
Sbjct: 121 ANRPISAAAEPLTIEVVALDWKWLFIYPEQGIATINELATPVDVPIRFKITASTVMNSFY 180

Query: 181 IPALAGQIYAMPSMETKLHAVINKAGEYDGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ 240
           IPALAGQIYAMP MET+L+AVIN+ G +DGFSAN+SGAGFSHMRFK+HG+D A FD WV+
Sbjct: 181 IPALAGQIYAMPGMETQLNAVINEPGTFDGFSANFSGAGFSHMRFKYHGMDVADFDQWVK 240

Query: 241 KAKAGAGKLDRAEYLKLEQPSEREPARLIGSIEPNLFHAIVNRCVAPNTVCMDKMMATDL 300
            AK     LDRA Y +LEQPSEREP R  G + P+L+HA++NRCVA  TVCM+K+M  D 
Sbjct: 241 DAKKNGSTLDRAVYTQLEQPSEREPVRHFGKVAPDLYHAVLNRCVAEGTVCMNKIMHEDA 300

Query: 301 N 301
           N
Sbjct: 301 N 301


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 603,582
Number of extensions: 22553
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 227
Effective length of database: 914,170
Effective search space: 207516590
Effective search space used: 207516590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)