BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2150.p (447 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980882|ref|YP_001354331.1| major facilitator transporter [... 625 e-180 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 246 3e-66 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 184 7e-48 gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 162 3e-41 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 107 2e-24 >gi|152980882|ref|YP_001354331.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 447 Score = 625 bits (1612), Expect = e-180, Method: Compositional matrix adjust. Identities = 320/418 (76%), Positives = 366/418 (87%) Query: 29 GAIEPGEIAVGVVIGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFL 88 G I PGEIA+GVVIGRASEYFDFFVYA+ASVLVFP +FFP A LEGTLY+F +F+FAFL Sbjct: 30 GHIAPGEIAIGVVIGRASEYFDFFVYAIASVLVFPSVFFPFAQPLEGTLYSFTVFAFAFL 89 Query: 89 ARPIGTTIFMAIQKHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIILLSLLRVGQ 148 ARP+GT FMAIQ+ + RE KLTLALF+LGFSTAGIA LP+Y +G+ AI+ LSLLR+GQ Sbjct: 90 ARPLGTVAFMAIQRRFSREAKLTLALFLLGFSTAGIAFLPSYAQLGMSAILFLSLLRIGQ 149 Query: 149 GLALGGAWDGLPSLLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSNLSSADFLE 208 G+ALGG+WDGLPSLLA+NAPQN+RGWYA LGQLGAP+GF++AA LF+++LS LS ADFLE Sbjct: 150 GIALGGSWDGLPSLLALNAPQNRRGWYAMLGQLGAPVGFLIAAGLFSFLLSELSRADFLE 209 Query: 209 WGWRYPFYVAFAINVVALFSRLRLVSAPEYAKLLDERELEPAGAVELVTTQGRNIIIGAL 268 WGWRYPFYVAFAINVVALF+RLRLVS PEY++LLDE+ELEP A E+V QGRN+IIGAL Sbjct: 210 WGWRYPFYVAFAINVVALFARLRLVSTPEYSRLLDEQELEPVSATEIVQKQGRNLIIGAL 269 Query: 269 AALASYALFHLVTVFPLSWVKLYSLREATDFLVVQIWGGVIMAAGIVVSGLIADRFGRRN 328 AALASYALFHLVTVFPLSW+ LYS R + FL VQ+ G + A G+V+SGLIADRFGRR Sbjct: 270 AALASYALFHLVTVFPLSWISLYSDRSISAFLHVQMMGAALAAVGVVISGLIADRFGRRT 329 Query: 329 TLGTMALLIAILSAFVPTLMNGGESGQNTFILIGFALLGLSYGQAAGAVTANFKTRYRYT 388 TLGT+A LIAI S FVP L+NGG G++ FILIGFALLGLSYGQAAGAV+ANF +YRYT Sbjct: 330 TLGTLACLIAIFSGFVPMLLNGGTRGEDLFILIGFALLGLSYGQAAGAVSANFHAKYRYT 389 Query: 389 GAALTSDLAWLVGAGFAPLVALGLSAHFGMAYVSFYLLSGAVGSLAALSLNRALEARD 446 GAALTSDLAWLVGA FAPLVALGLSAHFG+ YVS YLLSGAVGSLAALSLNRALE ++ Sbjct: 390 GAALTSDLAWLVGAAFAPLVALGLSAHFGLGYVSLYLLSGAVGSLAALSLNRALEIKN 447 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 246 bits (627), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 1/395 (0%) Query: 32 EPGEIAVGVVIGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFLARP 91 P + +IG E+FDF++YA A+VLVFP LFFP++ G L + F+ AF ARP Sbjct: 13 SPATVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIAFFARP 72 Query: 92 IGTTIFMAIQKHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIILLSLLRVGQGLA 151 +G+ +F GR+ L AL +G ST I LLPTY+ IG A +LL+L R GQGL Sbjct: 73 VGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRFGQGLG 132 Query: 152 LGGAWDGLPSLLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSNLSSADFLEWGW 211 LGG W G L NAP K WY QLGAPLGF ++ +F + L++ F +GW Sbjct: 133 LGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQFFSYGW 192 Query: 212 RYPFYVAFAINVVALFSRLRLVSAPEYAKLLDERELEPAGAVELVTTQGRNIIIGALAAL 271 R PF + + +V L+ RL++ P + K+LD+ E + R +++G + A Sbjct: 193 RIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHSRVLVLGTIIAT 252 Query: 272 ASYALFHLVTVFPLSWVKLYSLREATDFLVVQIWGGVIMAAGIVVSGLIADRFGRRNTLG 331 A++ LF+L+TVF LSW +FL++Q++ V A I +S L+AD++GRR T+ Sbjct: 253 ATFVLFYLMTVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALLADKYGRRITMI 312 Query: 332 TMALLIAILSAFV-PTLMNGGESGQNTFILIGFALLGLSYGQAAGAVTANFKTRYRYTGA 390 +++ I + + P + G F+ +G AL+G++YG ++ F T RYTG Sbjct: 313 LVSIAIMLFGFLISPMFVAHDAIGVTFFLSLGLALMGMTYGPLGTMLSELFPTEIRYTGV 372 Query: 391 ALTSDLAWLVGAGFAPLVALGLSAHFGMAYVSFYL 425 +LT +L +VGA AP A L+ ++G+ YV +YL Sbjct: 373 SLTFNLGGIVGASLAPYAATWLATNYGLHYVGYYL 407 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 184 bits (468), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 140/422 (33%), Positives = 225/422 (53%), Gaps = 21/422 (4%) Query: 34 GEIAVGVVIGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFLARPIG 93 G IA IG E++DF +Y +A+ LVF LFFPN + GTL A ++ F ARP+G Sbjct: 22 GTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFFARPLG 81 Query: 94 TTIFMAIQKHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIILLSLLRVGQGLALG 153 IF GR+ L L +F++G T I LPTY+HIG+WA +LL +LR QG+ LG Sbjct: 82 GAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQGVGLG 141 Query: 154 GAWDGLPSLLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSNLSSADFLEWGWRY 213 G W G ++ +AP+++RG+Y +L Q+G PLG ++A +FA ++S L ADFL WGWR Sbjct: 142 GEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGVFA-IVSKLPEADFLSWGWRI 200 Query: 214 PFYVAFAINVVALFSRLRLVSAPEYAKLLDERELEPAGAVELVTTQGRNIIIGALAALAS 273 PF ++ + VV R ++ +P + ++ + EL ++ + R + ++ Sbjct: 201 PFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIGLKISE 260 Query: 274 YALFHLVTVFPLSWVKLYSLREATDFLVVQ--IWGGVIMAAGIVVSGLIADRFGRRNTLG 331 + +++TVF + V + + L++ ++ ++ I + GL++D+ GRR Sbjct: 261 VSWVYILTVFIV--VHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRRPMYI 318 Query: 332 TMALLIAILSAFVPTLMNGGESGQNTFILIGFALLGLSYGQA------AGAVTANFKTRY 385 AL L+ + L++ +S I+IG ++ LS G A F Sbjct: 319 WGALFTVALAFPLFILLDTRDSA----IIIGVMIVALSLGHGFMFAPEATYFPELFGANV 374 Query: 386 RYTGAALTSDLAWLVGAGFAPLVALGLSAHF-GMAYVSFYLLSGAVGSLAALSLNRALEA 444 RY+GA L +A +G G +P++A GL A+F G VS L+ LAA++L A+ A Sbjct: 375 RYSGATLGFQVAAAIGGGLSPIIATGLMAYFGGTTGVSVMLI-----LLAAITLVAAISA 429 Query: 445 RD 446 R+ Sbjct: 430 RE 431 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/379 (31%), Positives = 195/379 (51%), Gaps = 5/379 (1%) Query: 42 IGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFLARPIGTTIFMAIQ 101 IG E++DF +Y +A+ LVF LFFPN L GTL A ++ FLARP+G IF Sbjct: 30 IGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGSYAVGFLARPLGGAIFGHYG 89 Query: 102 KHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIILLSLLRVGQGLALGGAWDGLPS 161 GR+ L + L ++G T I LLPTY IG+WA ILL LR+ QG+ LGG W G Sbjct: 90 DRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLITLRIIQGIGLGGEWGGAAV 149 Query: 162 LLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSNLSSADFLEWGWRYPFYVAFAI 221 ++ ++P+N+RG+Y +L Q+G PLG ++A +F++ +S + AD L WGWR PF ++ + Sbjct: 150 MVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSF-VSKMPEADILSWGWRIPFLLSAVL 208 Query: 222 NVVALFSRLRLVSAPEYAKLLDERELEPAGAVELVTTQGRNIIIGALAALASYALFHLVT 281 +V +F R + +P + + + L + ++++ R I ++ + +++T Sbjct: 209 IIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPRTFFIAIGLKISEVSWVYMLT 268 Query: 282 VFPLSWVKLYSLREATDFLVVQIWGGVIMAAGIVVSGLIADRFGRRNTLGTMALLIAILS 341 VF + + + L + ++ I + G ++D GRR L + L I Sbjct: 269 VFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSDVIGRR-PLYFIGALFTIAF 327 Query: 342 AFVPTLMNGGESGQNTFILIGFALL---GLSYGQAAGAVTANFKTRYRYTGAALTSDLAW 398 AF L + + + + A+ GL + A F RY+GA+ +A Sbjct: 328 AFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPELFGANVRYSGASFGFQVAA 387 Query: 399 LVGAGFAPLVALGLSAHFG 417 +G G +P++A L+ + G Sbjct: 388 AIGGGLSPIIATALAGYLG 406 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 30 AIEPGEIAVGVVIGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFLA 89 A E ++ + +G E++DFF+Y ++ + +LF P+ P L + + F+ Sbjct: 16 AKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAA-LLASLGALAAGFVI 74 Query: 90 RPIGTTIFMAIQKHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIILLSLLRVGQG 149 RPIG +F + GR+ L + M+G STA I LP+Y +G A I L +LR+ QG Sbjct: 75 RPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQG 134 Query: 150 LALGGAWDGLPSLLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSNLSSADFLEW 209 LA+GG + G +A ++ ++RG Q+ + +G I++ ++ + + A F EW Sbjct: 135 LAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDMASFKEW 194 Query: 210 GWRYPFYVAFAINVVALFSRLRLVSAPEYAKLLDERELE 248 GWR PF ++ A+ + +++ R +L +P + +L + L Sbjct: 195 GWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLS 233 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,061,675 Number of extensions: 47116 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 247 Number of HSP's successfully gapped: 6 Length of query: 447 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 361 Effective length of database: 903,079 Effective search space: 326011519 Effective search space used: 326011519 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)