BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2140.p (122 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthi... 213 2e-57 gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi... 94 3e-21 gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 74 3e-15 gi|152982173|ref|YP_001354646.1| PilG twitching motility two-com... 72 1e-14 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 66 8e-13 >gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 121 Score = 213 bits (543), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/121 (88%), Positives = 114/121 (94%) Query: 1 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMD 60 MA+ILVVDDS+TVR EVGDFLKKN LDV LAVDGRDGL K+KGD SIKLV+SDVNMPNMD Sbjct: 1 MAKILVVDDSATVRNEVGDFLKKNDLDVVLAVDGRDGLAKMKGDSSIKLVISDVNMPNMD 60 Query: 61 GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 GLTMAEKIRSELGN+SVNIIMLTTENSP+MKERGKAAGIKGWIVKPFKG+AVL TFKKLV Sbjct: 61 GLTMAEKIRSELGNSSVNIIMLTTENSPMMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120 Query: 121 G 121 Sbjct: 121 A 121 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 93.6 bits (231), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDGLT 63 IL VDDS ++R V L+ G V AVDG+DGL+K K LV++D NMP MDG + Sbjct: 5 ILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQ-VFDLVLTDQNMPRMDGFS 63 Query: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121 + +R+ + I++LTTE+S MK +G+AAG GW+VKPF + + KK++G Sbjct: 64 LIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVIG 121 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 73.6 bits (179), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 6/125 (4%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGL-DVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDG 61 + LVVDD ST+R V + LK+ G +V A DG L KL+ + VVSD NMPNMDG Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSE-QFDFVVSDWNMPNMDG 65 Query: 62 LTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKG----EAVLPTFK 117 LTM + IR++ + + ++M+T E AG G++VKPF E + F+ Sbjct: 66 LTMLQHIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKLAKIFE 125 Query: 118 KLVGA 122 KL A Sbjct: 126 KLAAA 130 >gi|152982173|ref|YP_001354646.1| PilG twitching motility two-component system response regulator [Janthinobacterium sp. Marseille] Length = 133 Score = 71.6 bits (174), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDGL 62 +I+V+DDSST+R FL + G V LA DG D L K+ D L+ D+ MP +DG Sbjct: 11 KIMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKM-NDHRPALIFCDILMPRLDGY 69 Query: 63 TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKK 118 I+ S +IML++++ + RG G ++ KPF +++L T ++ Sbjct: 70 QTCALIKKSAKFHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTVRE 125 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 65.9 bits (159), Expect = 8e-13, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDGL 62 ++LVVDDS TVR L G V +AVDG DG N ++ + LV++D++MP MDG+ Sbjct: 636 KVLVVDDSLTVRELERKLLSNCGYQVVVAVDGMDGWNAVRTE-HFDLVITDIDMPRMDGI 694 Query: 63 TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVK-PFKGEAVLPTFKKLVG 121 + IR S+ +++++ ++ ++RG AG + K F E++L L+G Sbjct: 695 ELVSLIRQAANLQSLPVMIVSYKDREEDRQRGLDAGADYYFTKSSFHDESLLQAVVDLIG 754 Query: 122 A 122 A Sbjct: 755 A 755 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 272,359 Number of extensions: 10035 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 11 Length of query: 122 Length of database: 1,221,021 Length adjustment: 72 Effective length of query: 50 Effective length of database: 954,837 Effective search space: 47741850 Effective search space used: 47741850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 124 (52.4 bits)