BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2138.p
         (202 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982800|ref|YP_001353296.1| hypothetical protein mma_1606 [...   207   3e-55

>gi|152982800|ref|YP_001353296.1| hypothetical protein mma_1606
           [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  207 bits (528), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 134/182 (73%)

Query: 21  ISAAARDGFDTLLQQALRSSLVPSEASAEITVLDDVAAIVEKKMVVLTISSYLFRLMVMF 80
           IS  A++GFD LL ++L++SL  +  ++EI +  +V+ +VE++ VVLT+SSYLFRLMVM 
Sbjct: 2   ISPHAQEGFDLLLIRSLKASLPTAMENSEIGITTEVSELVEQEAVVLTVSSYLFRLMVMI 61

Query: 81  HFTPDAATRGHFARLTRANPAEMGEQAFMDAIAECGNLCCGIFNRELGRFFPHLGMSTPN 140
           HF  DA T  + A +      +   QAF DAIAE GNL CGI NRELG +FPH+GMSTPN
Sbjct: 62  HFKQDAQTMAYMAGMHEVAAEDNDRQAFHDAIAEYGNLFCGILNRELGSYFPHIGMSTPN 121

Query: 141 VIDTQCVAYLQKLDCAHVRHFAIDLADAPRFHVSLCISAYDHLDFAVSVEEQVDTTGELE 200
            +D QC++Y++ L+C+H++HFA+ +  AP FHVSLC+SAYD +DF V+ +E   +TGELE
Sbjct: 122 FLDGQCMSYIEMLNCSHIQHFAVSVEGAPLFHVSLCVSAYDDIDFEVAEDEASASTGELE 181

Query: 201 LF 202
           LF
Sbjct: 182 LF 183


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 423,951
Number of extensions: 15135
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 123
Effective length of database: 928,958
Effective search space: 114261834
Effective search space used: 114261834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)