BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2137.p (241 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982813|ref|YP_001353297.1| hypothetical protein mma_1607 [... 258 3e-70 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 62 3e-11 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 59 2e-10 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 59 2e-10 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 59 3e-10 >gi|152982813|ref|YP_001353297.1| hypothetical protein mma_1607 [Janthinobacterium sp. Marseille] Length = 239 Score = 258 bits (658), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/211 (60%), Positives = 164/211 (77%) Query: 28 RRARQLIDAAQLEQVRDQAQAALVQQQEQWAAHQQHLEQERLAAQDHMAELRRDSEAMLA 87 RR ++D AQ + + Q + Q++ H+Q LEQE+L QD +++L+ + E ++ Sbjct: 28 RRLAGMVDIAQAQALEHDLQNVMRDMQQKMEQHEQLLEQEKLLNQDQLSQLQEEHEQLIQ 87 Query: 88 RLSSQQSDHLSRVKQNCDDSQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFAL 147 LS + +D + +NC+ + DTI++L+GL++TFERWHDDM LI HNREM KNDEFAL Sbjct: 88 SLSERNADSNAIAVENCERAADTIARLMGLIKTFERWHDDMGVLIKHNREMRVKNDEFAL 147 Query: 148 IVNQVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRDNLYQNDLITTT 207 IVNQV+IVALNASIEAARAG HGRGFAVVA EVR LAQRAEKLSKSYR NL+++DLITTT Sbjct: 148 IVNQVIIVALNASIEAARAGEHGRGFAVVAAEVRSLAQRAEKLSKSYRSNLHESDLITTT 207 Query: 208 TFQDLQAGGKMIMGAVIGLDLINKKTRDALA 238 TFQDLQAGGKMI+GAVIGL+L+N KT++AL Sbjct: 208 TFQDLQAGGKMIVGAVIGLNLVNDKTKEALT 238 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 17/122 (13%) Query: 86 LARLSSQQSDHLSRVKQNCDD---------SQDTISKLLGLVRTFERWHDDMNELIAHNR 136 L +S + S VKQN D+ S T+++ G+V + D M E+ N Sbjct: 298 LEETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVV--VSQVVDTMEEI---NT 352 Query: 137 EMHRKNDEFALI---VNQVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKS 193 + D +I Q I+ALNA++EAARAG GRGFAVVA EVR+LAQR+ +K Sbjct: 353 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKE 412 Query: 194 YR 195 + Sbjct: 413 IK 414 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 13/120 (10%) Query: 86 LARLSSQQSDHLSRVKQNCDDSQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEF 145 L +S + S VKQN D+++ S L + ++E++ M+ ND Sbjct: 294 LEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVT---MNGINDSA 350 Query: 146 ALIVN----------QVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYR 195 I + Q I+ALNA++EAARAG GRGFAVVA EVR+LAQR+ +K + Sbjct: 351 KKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIK 410 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 14/151 (9%) Query: 86 LARLSSQQSDHLSRVKQNCDDSQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEF 145 L +S + S VKQN D+S+ + + ++E++ ++ + Sbjct: 299 LEETASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKI 358 Query: 146 ALIVN-------QVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRDNL 198 I+ Q I+ALNA++EAARAG GRGFAVVA EVR+LAQR+ +K + Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIK--- 415 Query: 199 YQNDLITTTTFQDLQAGGKMIMGAVIGLDLI 229 + + + + AG K++ A +D I Sbjct: 416 ----ALIGDSVEKVDAGSKLVAEAGTTMDEI 442 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 7/97 (7%) Query: 98 SRVKQNCDDSQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALIVN------- 150 S V++N D++Q + + ++E+IA ++ + + A I Sbjct: 311 STVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADITGVIDSIAF 370 Query: 151 QVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRA 187 Q I+ALNA++EAARAG GRGFAVVA EVR+LAQR+ Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 407 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 387,462 Number of extensions: 12852 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 19 Length of query: 241 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 160 Effective length of database: 921,564 Effective search space: 147450240 Effective search space used: 147450240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)