BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2136.p (808 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Jan... 1042 0.0 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 102 1e-22 gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthi... 94 4e-20 gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthi... 90 5e-19 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 88 3e-18 >gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Janthinobacterium sp. Marseille] Length = 806 Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/795 (66%), Positives = 633/795 (79%), Gaps = 8/795 (1%) Query: 1 MTIRMRITLLVILTFVAIAGIGGYAMYQSRSSAVEVRSVTEGVMPSVLASADLMGQLKDV 60 MTIR+RITLLVILTF+AI+ IGGYA++QSR SAVEV++VTEGV+PS LAS+DL+ QLK+V Sbjct: 1 MTIRLRITLLVILTFIAISLIGGYAVFQSRGSAVEVKTVTEGVVPSTLASSDLVAQLKEV 60 Query: 61 QLAAMVMVTESDNQLVAQENEKLADKKAVLEKALAAQAQQAEGVAQRGLIEQAKESLDNY 120 QL+AM +V+E D Q+ Q NEKL+ KK +LEKAL Q +Q + AQRGL+EQAKESL NY Sbjct: 61 QLSAMAIVSEPDMQIAVQNNEKLSAKKDILEKALDLQLKQVDSQAQRGLVEQAKESLVNY 120 Query: 121 FNAIDTTAKFKLAGKNEIAQAQFFGGVMQYQTELEGIVNTLRIEKNRFKDNAIASLNGKL 180 F+AID+T + KLAGK+EIA+A FG V+Q+Q ELE I++TLRIEKNR KD AIA+LN L Sbjct: 121 FDAIDSTMQLKLAGKDEIAKASLFGNVVQFQQELEQIIDTLRIEKNRSKDVAIAALNENL 180 Query: 181 AQTTTTISIVTVVAVLLLGGIGLLLYRQITGPISNMAAMMGEIATSQDFTRRLPVQRMDE 240 A TTT I++VT+ AV+ L IG LLYRQITGPIS M MM EIA SQDFTRR+P+ RMDE Sbjct: 181 ATTTTAITVVTIFAVIFLATIGFLLYRQITGPISRMQRMMSEIAASQDFTRRVPIDRMDE 240 Query: 241 VGHSIVAFNGMVEKIEQASAQVRQKTADMQAMLQNIPQGILTIVEGNKVHPEYSAFLETV 300 VGHSI AFNGM+EKIE+ASA VRQKTAD+Q MLQNIPQGILTIV+GNK+HPEYSA+LETV Sbjct: 241 VGHSIKAFNGMLEKIEEASALVRQKTADIQTMLQNIPQGILTIVDGNKIHPEYSAYLETV 300 Query: 301 FDTTDIAGRDVMELVFANTNLGADILSQIEAIGGACIGEDVMNFEFNEHLMVGEIEKTMA 360 F++ DI GRD+M+ VFA+TNLGAD L+Q+EAIGGACIGED+MNFEFN+HLMVGEIEK M Sbjct: 301 FESKDIVGRDIMDFVFADTNLGADTLAQMEAIGGACIGEDLMNFEFNQHLMVGEIEKRMP 360 Query: 361 DGSVKILDLSWSPITDEADMVIRLMLCVRDVTELRQLAAEANEQKRELEMIGEILAVAPA 420 DG VKILDLSWSPI DE DM++RLMLCVRDVTELRQLAAEANEQKRELE+IGEILAV+ Sbjct: 361 DGRVKILDLSWSPIVDENDMIVRLMLCVRDVTELRQLAAEANEQKRELEIIGEILAVSQD 420 Query: 421 KFAEFIGSARRFLDENEQIVHQNPQATAFAIAKLFRNMHTIKGNGRTYGLLHLANVVHHT 480 KF +FI S+ +F+DENE ++ N +++ F +AKLFRNMHTIKGNGRTYGLLHLA++VH Sbjct: 421 KFHDFIVSSLKFIDENELVIRHNTESSDFTVAKLFRNMHTIKGNGRTYGLLHLADIVHEA 480 Query: 481 EQHYDDLRHASSGAVWNQEELLLQLAQVREVIDRYARINDVTLGRGNNAGGDQVAAGYER 540 EQHYD+LR S VW+Q LL +LA VR ++RYARIN+V+L R G +V + Sbjct: 481 EQHYDELRKPDSDRVWDQALLLDELAGVRAAVERYARINEVSLSRQGPGRGGKVDS---- 536 Query: 541 HVLTIDRKHIQDSLLRLENVNTANLHELVAVRNDVRRTLRLLGTATIEDVLAPVIESLPA 600 L ID+KHIQ+SL RLENVNTANLHELVAVRN VRRTLRLLGT I++ L+ VIES+PA Sbjct: 537 -YLMIDKKHIQESLHRLENVNTANLHELVAVRNAVRRTLRLLGTERIDETLSGVIESMPA 595 Query: 601 LAADLGKAAPVVSIDDNGYVVHSFASPMLQNVFMHLIRNAMDHGLESTEERLAKGKPEAG 660 LA +LGK AP + I D GYVVH+ S +L++VFMHLIRNAMDHG+E+ E R+A GKPEAG Sbjct: 596 LAQELGKIAPKIEIKDGGYVVHNQISALLKDVFMHLIRNAMDHGIETPEVRVALGKPEAG 655 Query: 661 TIKLEMGVMDDMFQMALSDDGRGLALHKVRQIGIEKNLISIDQALTDAEIARLILQPGFS 720 I L M + + M + L DDGRGLAL ++RQI ++K L L D ARLILQ GFS Sbjct: 656 KISLGMDMDEKMLNITLRDDGRGLALKRIRQIALDKGLSDAPDQLDDLAAARLILQAGFS 715 Query: 721 TRSEVTEVSGRGVGMDAVLDFVTREHGQIEIRFTDTHEGAALRPFQIIVMLPENVAVEID 780 T +V+EVSGRGVGMDAVL FV+RE+G I+IRF D GA R F IIV LP AV+ D Sbjct: 716 TADKVSEVSGRGVGMDAVLAFVSRENGSIDIRFDDEATGADFRQFHIIVALPAAFAVKAD 775 Query: 781 GIDVPYPVGAQEVLQ 795 D QE+LQ Sbjct: 776 EADDKL---LQELLQ 787 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 6/123 (4%) Query: 616 DNGYVVHSFASPMLQNVFMHLIRNAMDHGLESTEERLAKGKPEAGTIKLEMGVMDDMFQM 675 D G V+ A P F HL+RNA+ HG+ES E+R A GK E G +++E+ + + Sbjct: 1452 DRG-VLEKMAGP-----FEHLLRNAIVHGIESREKRQAAGKNETGELRIEIRQEGNEVVI 1505 Query: 676 ALSDDGRGLALHKVRQIGIEKNLISIDQALTDAEIARLILQPGFSTRSEVTEVSGRGVGM 735 SDDG+GL L +R + L++ D AL+D+E LI PGFST E+TE++GRG+GM Sbjct: 1506 HFSDDGQGLNLDNIRNKALSSGLLTEDMALSDSETTDLIFHPGFSTAEEITELAGRGIGM 1565 Query: 736 DAV 738 D V Sbjct: 1566 DVV 1568 >gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 615 Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 13/171 (7%) Query: 601 LAADLGKAAPV----VSIDDNGYVVHSFASPMLQNVFMHLIRNAMDHGLESTEERLAKGK 656 LA DLGK + + + VV S P++ H++RN++DHG+E R GK Sbjct: 314 LAKDLGKDVELQIEGAETEVDRVVVDSLYDPLV-----HMLRNSLDHGIEEAAVRAKSGK 368 Query: 657 PEAGTIKLEMGVMDDMFQMALSDDGRGLALHKVRQIGIEKNLISIDQALTDAEIARLILQ 716 P TI L+ + LSDDG+G+ ++R I K LIS + A + E+ +L+ Sbjct: 369 PAKSTILLKAWQEASSVMIELSDDGKGMDGQQLRAKAISKGLISDNAAQSQEEMLQLVFL 428 Query: 717 PGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEIRFTDTHEGAALRPFQI 767 PGFST+ VSGRGVGMD V V + G I I D+ GA R F I Sbjct: 429 PGFSTKEVANSVSGRGVGMDVVKTAVEKHRGAITI---DSVLGAGTR-FSI 475 >gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 712 Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 39/215 (18%) Query: 601 LAADLGKAAPVVSIDDNGYVVHSFASPM-------LQNVFMHLIRNAMDHGLESTEERLA 653 LA+ LGK +V H A+ + + + HL+RN++DHG+E + R+A Sbjct: 401 LASKLGKKVE--------FVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIEMPDTRVA 452 Query: 654 KGKPEAGTIKLEMGVMDDMFQMALSDDGRGL----ALHKVRQIGIEKNLISIDQALTDAE 709 GK +G + L G + +SDDG GL L K +Q G+ + L D E Sbjct: 453 AGKSASGQLSLSAGHQGGNIIIEVSDDGGGLNRERILAKAKQQGL-----PVSDDLPDEE 507 Query: 710 IARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEIRFTDTHEGAALRPFQIIV 769 + +LI PGFST VT+VSGRGVGMD V +T G ++IR + + I++ Sbjct: 508 VWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITAMGGSVDIRSSKGYGTT------ILI 561 Query: 770 MLPENVAVEIDGIDVP-------YPVG-AQEVLQP 796 LP +A+ +DG+ + P+G E LQP Sbjct: 562 SLPLTLAI-LDGMSIKVGDEIYILPLGYVVESLQP 595 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/122 (44%), Positives = 76/122 (62%), Gaps = 2/122 (1%) Query: 635 HLIRNAMDHGLESTEERLAKGKPEAGTIKLEMGVMDDMFQMALSDDGRGLALHKVRQIGI 694 HL+RNA+DHG+E+ ++R A GKPE G I LE M + +SDDG G+ L ++R I Sbjct: 340 HLLRNAIDHGIENPQQRKAAGKPEQGLITLEARHSAGMLLVNVSDDGAGIDLDQLRATII 399 Query: 695 EKNLISIDQA--LTDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEIR 752 E+ L + D L++AE+ +L P FS R VT++SGRGVG+D V D + + G I I Sbjct: 400 ERKLSNADTVAQLSEAELLEFLLLPSFSLRDTVTDISGRGVGLDVVSDMLKQVRGTIRIS 459 Query: 753 FT 754 T Sbjct: 460 ST 461 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,661,803 Number of extensions: 67050 Number of successful extensions: 298 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 6 Length of query: 808 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 717 Effective length of database: 884,594 Effective search space: 634253898 Effective search space used: 634253898 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)