BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2131.p
         (230 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980359|ref|YP_001353058.1| signal peptidase I [Janthinobac...   125   2e-30

>gi|152980359|ref|YP_001353058.1| signal peptidase I
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  125 bits (314), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 26/239 (10%)

Query: 3   STIRQ--LLAQNKGLLAFIALMVVFRSAIADYNVVPSGSMLPTVMVGDRILVDKLAYDLR 60
           S +RQ   +  +      IAL+   RS + +   +PS SM+PT+ VGD ILV+K  Y +R
Sbjct: 72  SLLRQPAWIEYSGSFFPVIALVFFLRSFLYEPFKIPSTSMVPTLQVGDLILVNKYQYGIR 131

Query: 61  LPLTHISLMRLGEPQRGDIVTVDSRQAGEL-LLKRIVGLPGDVVELRDNVLYINGQAASY 119
           LP+ +  ++ +G PQRGD++     +   L  +KR+VG+PGD V  R+  L +NGQ  SY
Sbjct: 132 LPIINKKIIDIGNPQRGDVMVFKYPENMALDYIKRVVGVPGDTVTYRNKRLIVNGQPVSY 191

Query: 120 GPARAQPEQGDRVDQARYRDESIDGMNHLVRLSAAHPSLHSSFGP--------------- 164
            P     ++ + +  +++  E ++G+ H +  +   PS  ++  P               
Sbjct: 192 KPLPDYLDE-ETLSYSKHLSEDLNGVAHQILNNPRAPSYVAN--PHDFPNRDLCTYDVEG 248

Query: 165 --VVVPADHYMMLGDNRDNSMDSRYFGFFARNELMGRTRRIAFSLNADQYFKPRLDRFG 221
               VPA  Y M+GDNRDNS+DSRY+GF     ++G+   I  +LN    F   L R G
Sbjct: 249 FTCKVPAGQYFMMGDNRDNSLDSRYWGFVPDKNIVGKAFFIWLNLNN---FPSNLGRIG 304


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.140    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 556,238
Number of extensions: 24034
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 150
Effective length of database: 925,261
Effective search space: 138789150
Effective search space used: 138789150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)