BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2130.p (462 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980831|ref|YP_001354037.1| formyl-CoA transferase [Janthin... 90 2e-19 gi|152979919|ref|YP_001352090.1| formyl-coenzyme A transferase [... 86 3e-18 gi|152981165|ref|YP_001352091.1| formyl-coenzyme A transferase [... 85 8e-18 gi|152980949|ref|YP_001354016.1| hypothetical protein mma_2326 [... 74 2e-14 gi|152980830|ref|YP_001354039.1| formyl-coenzyme A transferase [... 74 2e-14 >gi|152980831|ref|YP_001354037.1| formyl-CoA transferase [Janthinobacterium sp. Marseille] Length = 411 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 18/202 (8%) Query: 205 ARPLAGVRVLDLTRVLAGPTATRFLAGFGADVLRIDPASWNE--------PGV----VPE 252 ++ LAG+R+LD+T V AGP+A++ LA GADV++++P + PGV Sbjct: 2 SKALAGLRILDMTHVQAGPSASQLLAWMGADVIKLEPPQGDITRGQLRDIPGVDSLYFGT 61 Query: 253 MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVDV 312 + KR + + E +A LL + DV++ + L+ G +R RA+NP L+ Sbjct: 62 LNCNKRSITVNMKTDEGKAIFADLLTKCDVLMENFGPGVLDRFGFTWERVRAINPMLIMA 121 Query: 313 ALDAYGWSGPWAGRRGFDSLVQ-MSSGIADFGMKQKGSDQPVPLP-VQALDHATGYLLAA 370 ++ +G +GP++ + ++++ Q M +A G SD P + Q D TG Sbjct: 122 SIKGFGSTGPYSDFKAYENVAQAMGGAMATTGF----SDGPPCVSGAQVGDSGTGLHFVI 177 Query: 371 SVLRGLALRQQSGQGSQYRLSL 392 +L L R Q G+G +++ Sbjct: 178 GILAALHHRVQYGEGQYVEVAM 199 >gi|152979919|ref|YP_001352090.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 419 Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 19/201 (9%) Query: 207 PLAGVRVLDLTRVLAGPTATRFLAGFGADVLRID-PASWNE--------PG----VVPEM 253 PLAGV+++D T V AGP T+ LA FGADV++++ P S + PG + Sbjct: 6 PLAGVKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPGKDALYFTML 65 Query: 254 TLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVDVA 313 KR L+ E + LE L+ ++DVMV + AL+ +G +R + LNP ++ + Sbjct: 66 NSNKRSLTLDTKTQEGKEVLEKLIKESDVMVENFGPGALDRMGFSWERVQELNPGMIMAS 125 Query: 314 LDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGS-DQPVPLPVQAL-DHATGYLLAAS 371 + + + + ++++ Q + G A G D P + AL D TG LA Sbjct: 126 VKGFSDGHHYEDLKVYENVAQCAGGAA----STTGFWDGPPTVSAAALGDSNTGMHLAIG 181 Query: 372 VLRGLALRQQSGQGSQYRLSL 392 +L L RQ++G+G + +S+ Sbjct: 182 ILTALMGRQKTGKGQKVAVSM 202 >gi|152981165|ref|YP_001352091.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 416 Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 37/237 (15%) Query: 205 ARPLAGVRVLDLTRVLAGPTATRFLAGFGADVLRID-----PASWNEPGVVPE------- 252 ++ L+G R+LD T V +GPT T+ LA FGADV++++ A+ + +PE Sbjct: 2 SKALSGYRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPEADSLYFT 61 Query: 253 -MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVD 311 + KR L+ P+ +A LETL+ + DV+V + AL+ +G +R LNP ++ Sbjct: 62 MLNHNKRSITLDTKNPKGKAVLETLIKECDVLVENFAPGALDRMGFTWERINELNPRMIV 121 Query: 312 VALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPV--QALDHATGYLLA 369 ++ +G GP+ + ++++ Q + G A G D P+ Q D TG LA Sbjct: 122 ASVKGFG-PGPYEHCKVYENVAQCAGGSA----STTGFDDGPPMVTGAQIGDSGTGLHLA 176 Query: 370 ASVLRGLALRQQSGQGSQY------------RLSLARTARL-----LADYPAAPAQP 409 +L L R SG+G + R+ L RL + +YP P P Sbjct: 177 LGILAALLQRHASGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTGVMKEYPQYPDTP 233 >gi|152980949|ref|YP_001354016.1| hypothetical protein mma_2326 [Janthinobacterium sp. Marseille] Length = 378 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 207 PLAGVRVLDLTRVLAGPTATRFLAGFGADVLRIDPASWNEP----GVVPEMT-------- 254 PLAG++VL+L ++AGP +R LA FGA+V++I+ +P V+ + T Sbjct: 9 PLAGIKVLELGTLIAGPFCSRMLAEFGAEVIKIESPDGGDPIRQWRVLKDGTSLWWSVQA 68 Query: 255 LGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVDVAL 314 K+ L L + L +AD+++ YR LE LG ++ +A NPA + V L Sbjct: 69 RNKKSLTLNLKDARGQKIARQLALEADIIIENYRPGVLEKWSLGYEQLKAENPATIMVRL 128 Query: 315 DAYGWSGPWAGRRGFDSLVQMSSGI 339 +G +GP + GF ++ + G+ Sbjct: 129 SGFGQTGPLKDQPGFGAIGESMGGL 153 >gi|152980830|ref|YP_001354039.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 416 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 17/202 (8%) Query: 205 ARPLAGVRVLDLTRVLAGPTATRFLAGFGADVLRID-PASWNEPGV----VPE------- 252 ++PL G++++D T V AGP+ + LA FGADV++++ P S + +P+ Sbjct: 2 SKPLDGIKIIDFTHVQAGPSCAQQLAWFGADVIKVERPGSGDATRTSLRDIPDADALYFT 61 Query: 253 -MTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVD 311 + KR L+ + E + LE L+ Q+D+M+ + AL+ +G + ++LNP L+ Sbjct: 62 MLNSNKRSLTLDTKKAEGKEVLEKLIRQSDIMIENFAPGALDRMGFTWEYIQSLNPRLIL 121 Query: 312 VALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQAL-DHATGYLLAA 370 ++ + + + +D++ Q + G A D P + AL D TG LA Sbjct: 122 ASVKGFSDGHFYEDLKVYDNVAQAAGGAA---TTTGFWDGPPTISGAALGDSNTGMHLAI 178 Query: 371 SVLRGLALRQQSGQGSQYRLSL 392 +L L R +G G + +S+ Sbjct: 179 GILAALQHRHLTGLGQKVAVSM 200 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.131 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,096,755 Number of extensions: 46415 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 5 Length of query: 462 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 375 Effective length of database: 899,382 Effective search space: 337268250 Effective search space used: 337268250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)