BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2129.p (517 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 295 4e-81 gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-li... 294 1e-80 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 271 1e-73 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 200 2e-52 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 179 3e-46 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 295 bits (755), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 189/483 (39%), Positives = 273/483 (56%), Gaps = 32/483 (6%) Query: 32 MTVLALAALLGGCAVGPDYVRPAMDLPQAYKEQ---------GPWKVAAPRPVDDRQHWW 82 ++ + A +L GC+ +DLP AY+EQ G WK+AAP DR WW Sbjct: 8 LSTMVAALVLAGCSTARPPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKDRGAWW 67 Query: 83 EAYGDPILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQTNT 142 + +GD L++LI +A +N + A A+ + A+A A V A V A G TR + Sbjct: 68 KVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTR----S 123 Query: 143 NGVQRLGDNYTVGLNASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQATLAQDYL 202 Q Y L+ ++E D++GR+ + A +A+ + + L +Q+ +AQ Y Sbjct: 124 GNAQGASTQYRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQSDVAQQYF 183 Query: 203 QLRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQAQWIDLDAT 262 +R D + D+ +TVA +L+LT ++ AG DVAQA+T+ + A+ + Sbjct: 184 TIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAELEGVKRQ 243 Query: 263 RNQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLPSDLLERR 322 R Q +HA+A+L+GKAPA F+L P+ P L A++ +P+GLPSDLLERR Sbjct: 244 RAQRDHALAILLGKAPAEFTL-PVAP--------------LAAAVVTVPSGLPSDLLERR 288 Query: 323 PDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWSLG----A 378 PDIA A+R AA++A IG A+AA+FP L L+ S GY S LF SR W LG Sbjct: 289 PDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGT 348 Query: 379 ALAETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQESAVQAQ 438 L+ +FDGG + A A Y+A VA Y+ VL G QDVEDNLS LR LD++ + Q Sbjct: 349 ILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQ 408 Query: 439 AVKSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGG 498 AV SAQLA RLA ++Y+ G+ +Y V+ Q +SL++QRS + G++ VASV LI+A GG Sbjct: 409 AVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGG 468 Query: 499 GWQ 501 GW+ Sbjct: 469 GWE 471 >gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 480 Score = 294 bits (752), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 195/456 (42%), Positives = 267/456 (58%), Gaps = 29/456 (6%) Query: 61 YKEQGPWK-----VAAPRPVDDRQHWWEAYGDPILNDLIAQANAANQTIQQAAAQYRQAQ 115 YKE G W+ AA P D WW + DP+LNDL + N+ ++ AQ A+ Sbjct: 33 YKEAGLWQEGTANSAANVPDD----WWTLFQDPVLNDLEGRLVVGNENLKSLVAQVAAAR 88 Query: 116 ATAAVARASLWPTVGAQTGATR-----AQTNTNGVQRLGDNYTVGLNASWEADIWGRIRR 170 A A + ++ PT+ +R + T + VQ +N ++ NASWE D+WGR+ + Sbjct: 89 AAVAASYSARLPTLSVGLAGSRDSNPSSTTRSTTVQNPSNNVSLSGNASWEVDLWGRLAQ 148 Query: 171 GAEAGDANAQASADSLAAARLTIQATLAQDYLQLRVTDLQKDLYRRTVAAYTRSLELTTH 230 AN QAS D LAAARL+ QATLAQ Y LR TD Q + R+VAAY RSL+LT Sbjct: 149 ATTGAQANLQASVDDLAAARLSAQATLAQTYFSLRTTDAQLSVLERSVAAYQRSLDLTQF 208 Query: 231 QYQAGTALRSDVAQAETQLRSAQAQWIDLDATRNQLEHAIAMLIGKAPAAFSLAPLTPAD 290 +Y G R DV QA+TQL++AQAQ + A R LEHAIA+L+G P+A Sbjct: 209 RYGGGVVARVDVLQAQTQLKAAQAQLAEAIAQRAILEHAIAVLLGVPPSAL--------- 259 Query: 291 ANDSAIDANAQRLQASLPQIPAGLPSDLLERRPDIANAERLAAAANANIGVARAAYFPTL 350 A++ NA QA P +P LP+ LLERRPDIA A+R AAA A IGVA AAYFP+L Sbjct: 260 ----ALERNASLPQA--PLVPQMLPTTLLERRPDIAAAQRRVAAAYAQIGVAHAAYFPSL 313 Query: 351 TLSASGGYNSLAFGQLFDTPSRVWSLGAALAETIFDGGARSARNDAAVAAYDAAVAQYKQ 410 LSA GGY + + L P+ WSLGA++A+ IFDGG R + A + D A + Y+Q Sbjct: 314 VLSAGGGYQNSSLSNLISAPNLFWSLGASVAQAIFDGGQRQLASAQAQSVADQATSAYRQ 373 Query: 411 TVLAGLQDVEDNLSTLRVLDQESAVQAQAVKSAQLAERLAMSQYQAGTVTYLSVVTTQAT 470 TVL LQ+VEDNL L QE+ +Q +++++AQ + + QY+AGTV+YL+V Q T Sbjct: 374 TVLTALQEVEDNLILAAQLQQEAQLQQESLEAAQRTLEITLDQYRAGTVSYLNVAIAQTT 433 Query: 471 SLTNQRSAVTLLGRQLVASVALIKATGGGWQVGQPD 506 +L ++ + ++ R+L A+ L+K G W+ PD Sbjct: 434 ALVSENNLLSTQNRRLAATNILLKNIAGRWEPDNPD 469 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 271 bits (692), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 186/478 (38%), Positives = 264/478 (55%), Gaps = 25/478 (5%) Query: 33 TVLALAALLGGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRPVDDRQHWWEAYGDPILND 92 ++LAL +LGGCAVGPDY RP + QA+K + W+ + PR + + WWE + D LN Sbjct: 11 SLLALL-ILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGELKGAWWEIFRDAELNA 69 Query: 93 LIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQT---------NTN 143 L QA QT+ A A+ QA+A A VA +S +P +GAQ G+ R +T N+ Sbjct: 70 LQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTSAERPLTNYNSQ 129 Query: 144 GVQRLGDNYTVGLNASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQATLAQDYLQ 203 + +++ S+E D++GR+RR AE A AQ + RL + A LA DYL Sbjct: 130 NSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRLVLTAELAADYLV 189 Query: 204 LRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQAQWIDLDATR 263 LR TD + D+ ++T+ A T++L+ + +++ G A D+ Q + + Q Q L R Sbjct: 190 LRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAATQTQLTLLQDQR 249 Query: 264 NQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLPSDLLERRP 323 + ++AIA L+G F L P+ A + P IP P+ LLERRP Sbjct: 250 ARYQNAIATLVGVPAPDFKL-PVNLA--------------VTTAPAIPLTAPAALLERRP 294 Query: 324 DIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWSLGAALAET 383 DIA AER AAANA IGVAR+AYFP+L LS G ++ LF P+ +WS+G + + Sbjct: 295 DIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQM 354 Query: 384 IFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQESAVQAQAVKSA 443 IFDGG SA D A A Y A+ Y+Q+VL +Q+V+D L++ L Q A SA Sbjct: 355 IFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSA 414 Query: 444 QLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGGWQ 501 + L+ +YQ+G T L VV Q T L+ +R V L G++LV +V LIKA GGGW Sbjct: 415 DRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWH 472 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 200 bits (508), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 161/481 (33%), Positives = 246/481 (51%), Gaps = 30/481 (6%) Query: 30 KGMTVLALAA-LLGGCAVGPDYVRPAMDLPQAYKEQGPWKV--AAPRPVDDRQHWWEAYG 86 K +T+ LAA +L C++ P YVRP D P A P K R VD W + Sbjct: 2 KTITLALLAAGVLSACSMAPKYVRP--DAPVAADYGVPSKADNNQVRAVD--IGWRNFFT 57 Query: 87 DPILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQT----NT 142 DP L LI A A N+ ++ AA + +A+A + A L PT+ +RA+ + Sbjct: 58 DPRLQVLIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISN 117 Query: 143 NGVQRLGDNYTVGLN-ASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQATLAQDY 201 G + NY VGL A++E D +GR+R ++A A ++ ++ AA++++ + +A+ Y Sbjct: 118 TGSSVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAY 177 Query: 202 LQLRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQAQWIDLDA 261 L R Q+DL R+T + + +L+ +++ G + D+ E L++A+A + Sbjct: 178 LSERSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQR 237 Query: 262 TRNQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLPSDLLER 321 R Q +A+ +L+G+ L L PA A S Q L IPAGLPSDLL + Sbjct: 238 QRAQAMNALTLLVGQ-----PLTDLPPAQALSS---------QTILTDIPAGLPSDLLTQ 283 Query: 322 RPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWSLGAALA 381 RPDI +AE+ +ANANIG ARAA+FP ++L+A G +S LF+ SR WS L Sbjct: 284 RPDIRSAEQTLLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLV 343 Query: 382 ETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQESAVQAQAVK 441 IFD G + A D AVA Y++++ ++V D L +LDQ+ V+AQ + Sbjct: 344 LPIFDAGRNRGNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQ--VEAQRLV 401 Query: 442 SAQLAER--LAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGG 499 AER A ++Q G + L V+ Q T Q S V + +L +V L ++ GGG Sbjct: 402 QEAQAERFKFATQRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGG 461 Query: 500 W 500 Sbjct: 462 L 462 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 179 bits (455), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 173/505 (34%), Positives = 250/505 (49%), Gaps = 52/505 (10%) Query: 30 KGMTVLALAALLGGCAVGPDYVRPAMDL-PQAYKEQGPWKVAAPRPVDDRQHWWEAYGDP 88 K +T + A LL GCA ++ PQ + Q V R WW ++G Sbjct: 2 KILTGFSAALLLAGCATQATQQTLVPEVAPQWRQPQANVDATGTTSVLTR-DWWRSFGSS 60 Query: 89 ILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQTNTNGVQRL 148 L+ L+ + I A A+ QAQATA +A A+L P + GATR NG RL Sbjct: 61 ELDSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATR-----NG--RL 113 Query: 149 GDN---------YTVGLNASWEADIWGR---IRRGAEAGDANAQASADSLAAARLTIQAT 196 G + Y GL+A++E D WGR +R A AG A+ D++ LT+ A Sbjct: 114 GGDGNGTATGTVYQAGLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTV---HLTVTAG 170 Query: 197 LAQDYLQ---LRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQ 253 +A +LQ LR DL +VA+ R L++ + +AG A ++AQ L Sbjct: 171 VASSWLQTVGLRERVAIADL---SVASAQRLLDVIESRARAGAANPLELAQQRGVL---A 224 Query: 254 AQWIDLDATRNQLEHAI---AMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQI 310 AQ A R Q E ++ A+L+G+ P SL L + N +LQA P + Sbjct: 225 AQMRARAAIRQQAEDSLTTLAVLLGRNP---SLLVLAGTELN---------KLQA--PAV 270 Query: 311 PAGLPSDLLERRPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTP 370 AGLP+DLL RRPDIA AE + A+ANI ARAA P ++L S +FD P Sbjct: 271 VAGLPADLLVRRPDIARAEAQLSGADANIIAARAAMLPRISLGGDITAGSNRVSSVFDNP 330 Query: 371 SRVWSLGAALAETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLD 430 V+SL A LA IF+ G +A D A+A + +A Y++ ++A DVE L+ + +D Sbjct: 331 --VYSLAAGLAAPIFNAGRLAAGRDLALAQREELLANYRRAIVAAFGDVEVALNAVAGID 388 Query: 431 QESAVQAQAVKSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASV 490 + Q + ++ AQ A LA S+Y+AG T L+++ Q T Q +A L +L A+V Sbjct: 389 AQRIAQEEELRQAQRAFNLAESRYRAGAETSLTLLDAQRTLYAAQDAAAQLRTLRLQAAV 448 Query: 491 ALIKATGGGWQVGQPDPATPAAPMA 515 +L KA GGGWQ+ + A P++ Sbjct: 449 SLYKALGGGWQLTAQEQKESAQPVS 473 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.126 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 874,868 Number of extensions: 26743 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 11 Length of query: 517 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 430 Effective length of database: 899,382 Effective search space: 386734260 Effective search space used: 386734260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)