BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2128.p (420 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 266 1e-72 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 162 3e-41 gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 150 1e-37 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 145 5e-36 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 95 9e-21 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 266 bits (681), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 165/409 (40%), Positives = 237/409 (57%), Gaps = 14/409 (3%) Query: 10 PSTPSTSSMSFKRTTLAVGISTALLLAG-GIAAWSTMQHASAADQPTTKTAP-------P 61 PS P+ S R TL + + L+ AG G W + A+ A Q P Sbjct: 12 PSRPNRSRTGKTRRTL-IWVLIILIAAGLGFWWWKSPSSANKAAQGNGGGRFGGPNMVQP 70 Query: 62 VAVTLARVQERDVPLYLAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQID 121 V+V AR Q D+ + + +G++ A + VV+ ++ G L ++ FKEG+ V+ GQLLAQID Sbjct: 71 VSVQEARRQ--DIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQID 128 Query: 122 PRALQAQLAQAEAQRAKDAANLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAV 181 PRA QA L QAE A+D A L NAR+DL RY L S+DA +QQLDTQ+ALV QLE V Sbjct: 129 PRAFQATLGQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQEALVRQLEGTV 188 Query: 182 KTDEAQIAYAKVQLSYTTITAPISGRVGARLVDPGNIVHAADATGLVVINQIDPITLMFT 241 K+D+ + AK+QLSYT +TAPI+GRVG + D GN+V AD G+V+I Q PI L+F+ Sbjct: 189 KSDQGTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGVVIITQTRPIALVFS 248 Query: 242 LPEEAVSGINRAQRNSQQPLKVIAYARDSQEVLATGKLVLLDNQINTSNGTVQLKARFDN 301 +P V I A+ + + + V A+ R + LATG++ +DN I+ + T+++KA F N Sbjct: 249 VPSANVPAIT-ARLRANETVAVEAWDRTGKTKLATGQVATVDNAIDVTTDTIKVKALFPN 307 Query: 302 AEHKLWPGQYVNARLQMTDHGSALTVPAAAIQRNQQGTYVYAINQDDQANMQAVKVDRIQ 361 + L+P Q V+ +Q+ LTVP AA+ R QG YVY +N D + + VK I Sbjct: 308 LDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGFYVYVVNADSTVSTRVVKPGAID 367 Query: 362 DGIAVLAAGSGVTVDQRVVIDGQYKLKPGSRIVESKPQPAKAAGAGAGS 410 G +A + + ++VVIDG +L+ G ++ P + AGA A S Sbjct: 368 SGW--MAIEAKLEAGEKVVIDGTDRLREGGKVEVIAADPKQRAGASAPS 414 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 162 bits (410), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 177/329 (53%), Gaps = 8/329 (2%) Query: 71 ERDVPLYLAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQIDPRALQAQLA 130 ++ +P+ + G VTA ++V V+ ++ + + KEG+ VK GQLL +D R+ Q+ +A Sbjct: 48 QKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDERSDQSNVA 107 Query: 131 QAEAQRAKDAANLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQIAY 190 +A A+ A A L +A L+R L +++ +Q +DT + V L + ++A I Sbjct: 108 KASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRANQAAIQS 167 Query: 191 AKVQLSYTTITAPISGRVGARLVDPGNIVHAADATGLVVINQIDPITLMFTLPEEAVSGI 250 + V LS I A ISGR+G V PG++ T +V I QIDPI + FTLPE ++ I Sbjct: 168 SSVALSDNQIKAGISGRIGVINVHPGSLAQPT-GTVMVTIVQIDPIMISFTLPERELANI 226 Query: 251 NRAQRNSQQPLKVIAYARDSQEVLATGKLVLLDNQINTSNGTVQLKARFDNAEHKLWPGQ 310 P+ QEVL TGKL +DN +T +GT+++KA F NAE KLWPG Sbjct: 227 RATYPQGNAPVHA---QLPGQEVL-TGKLTFIDNLADTQSGTIRMKAEFANAEQKLWPGS 282 Query: 311 YVNARLQMTDHGSALTVPAAAIQRNQQGTYVYAINQDDQANMQAVKVDRIQDGIAVLAAG 370 Y+N + + A+ VPA A+ VY + DD + + V I+ G AA Sbjct: 283 YINVSMVSREVPDAVLVPAQAVVTGPVDKLVYVVQPDDTVKEEKISVLAIEGG---QAAV 339 Query: 371 SGVTVDQRVVIDGQYKLKPGSRIVESKPQ 399 SGV RVV++G L+PG++I E K + Sbjct: 340 SGVKAGSRVVVEGTKNLRPGTKIREVKKE 368 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 120/395 (30%), Positives = 204/395 (51%), Gaps = 26/395 (6%) Query: 1 MNTSPTPRTPSTPSTSSMSFKRTTLAVGISTALLLAGGIAAWSTMQHASAADQPTTKTAP 60 M TS TPR F R+ +A+ + L++ + + + A P Sbjct: 1 MKTSTTPR-----------FSRSAIAIAVGVLLIVGAATVSLTGRAEKTQAAAPAA---- 45 Query: 61 PVAVTLARVQERDVPLYLAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQI 120 V+VT+A V ER V + G V A V ++ RI G +D V F++G+ VKKG LL I Sbjct: 46 -VSVTVASVLERSVTEWDDFSGRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTI 104 Query: 121 DPRALQAQLAQAEAQRAKDAANLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAA 180 DPR +A+LA+AEA RA A L A+ +L+R L + A Q++LDT++ + + +A Sbjct: 105 DPRPYKAELARAEAARAGAQARLALAKTELERTKRLLEERAVAQRELDTRENAMQEADAN 164 Query: 181 VKTDEAQIAYAKVQLSYTTITAPISGRVGARLVDPGNIVHAA-DATGLVVINQIDPITLM 239 +K +A + A++ L YT ITAP+SGRV + GN+V A L + + P+ + Sbjct: 165 LKATDAAVLTARLNLQYTEITAPVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVN 224 Query: 240 FTLPEE-----AVSGINRAQRNSQQPLKVIAYARDSQEVLATGKLVLLDNQINTSNGTVQ 294 F + E A +G S+ P+ + + + TG + DN+++T +GT++ Sbjct: 225 FEIDEPTYIRYAGNGTVGNSGVSKIPVSIGLTSEEGYP--RTGNVKSFDNRLDTGSGTIR 282 Query: 295 LKARFDNAEHKLWPGQYVNARLQMTDHGSALTVPAAAIQRNQQGTYVYAINQDDQANMQA 354 ++A F+N + L PG Y R + +AL + A+ +Q YV ++ D++ + Sbjct: 283 VRAVFNNEDGTLTPGMYARVRTGDANAKNALLIDDKAVGTDQDKKYVMVVSADNKVTYRP 342 Query: 355 VKVDRIQDGIAVLAAGSGVTVDQRVVIDGQYKLKP 389 V + I DG+ ++ SG+ D+R+V++G +++P Sbjct: 343 VSLGPIVDGLRIVR--SGLQKDERIVVNGLQRIRP 375 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 178/371 (47%), Gaps = 15/371 (4%) Query: 29 ISTALLLAGGIAAWSTMQHASAADQPTTKTAPPVAVTLARVQERDVPLYLAGVGTVTANA 88 +S AL L IA +AA PP V++ VQ + + G + + Sbjct: 10 LSAALFLIYAIAGCGAKSDQAAA-------PPPQEVSVVTVQPGVLGVTNELPGRMESIR 62 Query: 89 SVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQIDPRALQAQLAQAEAQRAKDAANLMNARL 148 V+ R+ G + K F+EG DVK G LL QIDP LQA A+A A+ A L A Sbjct: 63 VAEVRARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQ 122 Query: 149 DLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQIAYAKVQLSYTTITAPISGRV 208 +RY L +A ++Q+ D A Q A + + +A A++ L Y ++T+PISGR+ Sbjct: 123 KAKRYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRI 182 Query: 209 GARLVDPGNIVHAADATGLVVINQIDPITLMFTLPEEAVSGINRA------QRNSQQPLK 262 G LV G +V D T L ++ QIDPI + T V + RA + + K Sbjct: 183 GRALVTEGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKGAAK 242 Query: 263 VIAYARDSQEVLATGKLVLLDNQINTSNGTVQLKARFDNAEHKLWPGQYVNARLQMTDHG 322 V D QE GKL+ D ++ S+G+V L+A N + L PG YV AR++ Sbjct: 243 VTLVTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDE 302 Query: 323 SALTVPAAAIQRNQQGTYVYAINQDDQANMQAVKVDRIQDGIAVLAAGSGVTVDQRVVID 382 +A+TVP A+ R G+ V + D + + V+ G A + G+ +V+++ Sbjct: 303 NAITVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGS-SSGTAWIIT-DGLKEGDQVIVE 360 Query: 383 GQYKLKPGSRI 393 G K++PG+ + Sbjct: 361 GLQKVQPGATV 371 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 94.7 bits (234), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 21/349 (6%) Query: 62 VAVTLARVQERDVPLYLAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQID 121 V+VT R D L L G T+ + R +G + + G+ VK+G LLA ID Sbjct: 73 VSVTSPRSSATDNVLRLPG--TLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVID 130 Query: 122 PRALQAQLAQAEAQRAKDAANLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAV 181 + QL +A+A +A+ NL A+ +R+ LR +DA +QQ LD ++ +A AA Sbjct: 131 TPEVAQQLNEAKATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAAD 190 Query: 182 KTDEAQIAYAKVQLSYTTITAPISGRVGARLVDPGNIVHAADATG-LVVINQIDPITLMF 240 + +A + + QL Y+ I AP G V R +D G +V + +T L + + DP+ + Sbjct: 191 NSSKATVQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYV 250 Query: 241 TLPEEAVSGINRAQRN----SQQPLKVIAYARDSQEVLATGKLVLLDNQINTSNGTVQLK 296 +P+ + I ++ P KV GK+ I+T T+Q+ Sbjct: 251 YVPQSYSTQIKAGNTVGITLNEIPGKVF-----------DGKIARTAGAIDTVTRTLQVA 299 Query: 297 ARFDNAEHKLWPGQYVNARLQMT-DHGSALTVPAAAIQRNQQGTYVYAINQDDQANMQAV 355 N + L PG Y ++ + S+LT+P + +G V + D + +Q V Sbjct: 300 IDLPNPDGVLLPGAYAQVAIKASGGSASSLTIPNNTLLFRPEGPRVAVVGDDGKVRLQPV 359 Query: 356 KVDRIQDGIAVLAAGSGVTVDQRVVIDGQYKLKPGSRIVESKPQPAKAA 404 + R + G+ + A SGVT +++I+ L G + P KAA Sbjct: 360 VIAR-ELGVDIELA-SGVTAQDKLIINPADSLSNGDAVSVITPPADKAA 406 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.126 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 746,580 Number of extensions: 26816 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 14 Length of query: 420 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 334 Effective length of database: 903,079 Effective search space: 301628386 Effective search space used: 301628386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)